ISDA

Deposition Date 2021-01-06

Release Date 2021-12-08

Last Version Date 2024-07-10

Entry Detail

PDB ID:

7BGE

Keywords:

RIBOSOME

Title:

Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (head only)

Biological Source:

Source Organism:

Staphylococcus aureus subsp. aureus NCTC 8325 (Taxon ID: 93061)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.60 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Polymer Type:polyribonucleotide
Molecule:16S ribosomal RNA
Chain IDs:A (auth: a)
Chain Length:1556
Number of Molecules:1
Biological Source:Staphylococcus aureus subsp. aureus NCTC 8325

Protein Blast

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S2
Gene (Uniprot):rpsB
Chain IDs:B (auth: b)
Chain Length:255
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)

UniProt ID:Q2FZ25 Pfam ID:PF00318

Protein Blast

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S3
Gene (Uniprot):rpsC
Chain IDs:C (auth: c)
Chain Length:217
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)

UniProt ID:Q2FW12 Pfam ID:PF07650, PF00189

Protein Blast

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S7
Gene (Uniprot):rpsG
Chain IDs:D (auth: g)
Chain Length:156
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)

UniProt ID:P48940 Pfam ID:PF00177

Protein Blast

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S9
Gene (Uniprot):rpsI
Chain IDs:E (auth: i)
Chain Length:132
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)

UniProt ID:Q2FW39 Pfam ID:PF00380

Protein Blast

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S10
Gene (Uniprot):rpsJ
Chain IDs:F (auth: j)
Chain Length:102
Number of Molecules:1
Biological Source:Staphylococcus aureus subsp. aureus NCTC 8325

UniProt ID:Q931G5 Pfam ID:PF00338

Protein Blast

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S13
Gene (Uniprot):rpsM
Chain IDs:G (auth: m)
Chain Length:121
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)

UniProt ID:Q2FW30 Pfam ID:PF00416

Protein Blast

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S14 type Z
Gene (Uniprot):rpsZ
Chain IDs:H (auth: n)
Chain Length:61
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)

UniProt ID:Q2FW19 Pfam ID:PF00253

Protein Blast

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S19
Gene (Uniprot):rpsS
Chain IDs:I (auth: s)
Chain Length:92
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)

UniProt ID:Q2FW10 Pfam ID:PF00203

Ligand Molecules

Primary Citation

Stabilization of Ribosomal RNA of the Small Subunit by Spermidine in Staphylococcus aureus

Belinite, M, Khusainov, I, Soufari, H, Marzi, S, Romby, P, Yusupov, M, Hashem, Y.Show

Front Mol Biosci 8 1022 ? (2021)

Primary Citation of related structures