ISDA

Entry Detail

PDB ID:

7BGD

EMDB ID:

EMD-12178

Keywords:

RIBOSOME

Title:

Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (body only)

Biological Source:

Source Organism:

Staphylococcus aureus

Host Organism:

Escherichia coli

PDB Version:

Deposition Date:

2021-01-06

Release Date:

2021-12-08

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.20 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Polymer Type:polyribonucleotide
Description:mRNA
Chain IDs:A
Chain Length:32
Number of Molecules:1
Biological Source:Staphylococcus aureus

Polymer Type:polyribonucleotide
Description:16S ribosomal RNA
Chain IDs:B (auth: a)
Chain Length:32
Number of Molecules:1
Biological Source:Staphylococcus aureus

Protein Blast

Polymer Type:polypeptide(L)
Description:30S ribosomal protein S2
Chain IDs:C (auth: b)
Chain Length:255
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)

UniProt ID:Q2FZ25 Pfam ID:PF00318

Protein Blast

Polymer Type:polypeptide(L)
Description:30S ribosomal protein S4
Chain IDs:D (auth: d)
Chain Length:200
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)

UniProt ID:Q2FXK6 Pfam ID:PF00163, PF01479

Protein Blast

Polymer Type:polypeptide(L)
Description:30S ribosomal protein S5
Chain IDs:E (auth: e)
Chain Length:166
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)

UniProt ID:Q2FW23 Pfam ID:PF00333, PF03719

Protein Blast

Polymer Type:polypeptide(L)
Description:30S ribosomal protein S6
Chain IDs:F (auth: f)
Chain Length:98
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)

UniProt ID:Q2G113 Pfam ID:PF01250

Protein Blast

Polymer Type:polypeptide(L)
Description:30S ribosomal protein S8
Chain IDs:G (auth: h)
Chain Length:132
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)

UniProt ID:Q2FW20 Pfam ID:PF00410

Protein Blast

Polymer Type:polypeptide(L)
Description:30S ribosomal protein S11
Chain IDs:H (auth: k)
Chain Length:129
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)

UniProt ID:Q2FW31 Pfam ID:PF00411

Protein Blast

Polymer Type:polypeptide(L)
Description:30S ribosomal protein S12
Chain IDs:I (auth: l)
Chain Length:137
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)

UniProt ID:P0A0H0 Pfam ID:PF00164

Protein Blast

Polymer Type:polypeptide(L)
Description:30S ribosomal protein S15
Chain IDs:J (auth: o)
Chain Length:89
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)

UniProt ID:Q2G2Q1 Pfam ID:PF00312

Protein Blast

Polymer Type:polypeptide(L)
Description:30S ribosomal protein S16
Chain IDs:K (auth: p)
Chain Length:91
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)

UniProt ID:Q2FZ45 Pfam ID:PF00886

Protein Blast

Polymer Type:polypeptide(L)
Description:30S ribosomal protein S17
Chain IDs:L (auth: q)
Chain Length:87
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)

UniProt ID:Q2FW15 Pfam ID:PF00366

Protein Blast

Polymer Type:polypeptide(L)
Description:30S ribosomal protein S18
Chain IDs:M (auth: r)
Chain Length:80
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)

UniProt ID:Q2G111 Pfam ID:PF01084

Protein Blast

Polymer Type:polypeptide(L)
Description:30S ribosomal protein S20
Chain IDs:N (auth: t)
Chain Length:83
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)

UniProt ID:Q2FXY6 Pfam ID:PF01649

Ligand Molecules

Primary Citation

Stabilization of Ribosomal RNA of the Small Subunit by Spermidine in Staphylococcus aureus

Belinite, M, Khusainov, I, Soufari, H, Marzi, S, Romby, P, Yusupov, M, Hashem, Y.Show

Front Mol Biosci 8 1022 ? (2021)

Primary Citation of related structures