7BEZ image
Deposition Date 2021-01-06
Release Date 2021-07-14
Last Version Date 2024-01-31
Entry Detail
PDB ID:
7BEZ
Keywords:
Title:
Zinc bound domain 3 of carbonic anhydrase from marine diatom Thalassiosira weissflogii
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.98 Å
R-Value Free:
0.24
R-Value Work:
0.20
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cadmium-specific carbonic anhydrase
Gene (Uniprot):cdca1
Chain IDs:A, B
Chain Length:231
Number of Molecules:2
Biological Source:Thalassiosira weissflogii
Ligand Molecules
Primary Citation
Zeta-carbonic anhydrases show CS 2 hydrolase activity: A new metabolic carbon acquisition pathway in diatoms?
Comput Struct Biotechnol J 19 3427 3436 (2021)
PMID: 34194668 DOI: 10.1016/j.csbj.2021.05.057

Abstact

CDCA1 is a very peculiar member of the Carbonic Anhydrase (CA) family. It has been the first enzyme to show an efficient utilization of Cd(II) ions in Nature and a unique adaptation capability to live on the surface ocean. Indeed, in this environment, which is extremely depleted in essential metal ions, CDCA1 can utilize Zn(II) or Cd(II) as catalytic metal to support the metabolic needs of fast growing diatoms. In this paper we demonstrate a further catalytic versatility of this enzyme by using a combination of X-ray crystallography, molecular dynamics simulations and enzymatic experiments. First we identified the CO2 binding site and the way in which this substrate travels from the environment to the enzyme active site. Then, starting from the observation of a structural similarity with the substrate entry route of CS2 hydrolase from Acidanius A1-3, we hypothesized and demonstrated that also CS2 is a substrate for CDCA1. This finding is new and unexpected since until now only few CS2 hydrolases have been characterized, and none of them is reported to have any CO2 hydratase action. The physiological implications of this supplementary catalytic activity still remain to be unveiled. We suggest here that it could represent another ability of diatoms expressing CDCA1 to adapt to the external environment. Indeed, the ability of this enzyme to convert CS2 could represent an alternative source of carbon acquisition for diatoms, in addition to CO2.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
Feedback Form
Name
Email
Institute
Feedback