7BB3 image
Deposition Date 2020-12-16
Release Date 2021-01-20
Last Version Date 2024-01-31
Entry Detail
PDB ID:
7BB3
Keywords:
Title:
Structure of S. pombe YG-box oligomer
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.16 Å
R-Value Free:
0.29
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
C 2 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Survival motor neuron-like protein 1,Survival motor neuron-like protein 1
Gene (Uniprot):smn1
Chain IDs:A, B
Chain Length:69
Number of Molecules:2
Biological Source:Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Ligand Molecules
Primary Citation
Identification and structural analysis of the Schizosaccharomyces pombe SMN complex.
Nucleic Acids Res. 49 7207 7223 (2021)
PMID: 33754639 DOI: 10.1093/nar/gkab158

Abstact

The macromolecular SMN complex facilitates the formation of Sm-class ribonucleoproteins involved in mRNA processing (UsnRNPs). While biochemical studies have revealed key activities of the SMN complex, its structural investigation is lagging behind. Here we report on the identification and structural determination of the SMN complex from the lower eukaryote Schizosaccharomyces pombe, consisting of SMN, Gemin2, 6, 7, 8 and Sm proteins. The core of the SMN complex is formed by several copies of SMN tethered through its C-terminal alpha-helices arranged with alternating polarity. This creates a central platform onto which Gemin8 binds and recruits Gemins 6 and 7. The N-terminal parts of the SMN molecules extrude via flexible linkers from the core and enable binding of Gemin2 and Sm proteins. Our data identify the SMN complex as a multivalent hub where Sm proteins are collected in its periphery to allow their joining with UsnRNA.

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Primary Citation of related structures