7B80 image
Deposition Date 2020-12-12
Release Date 2021-07-07
Last Version Date 2024-10-23
Entry Detail
PDB ID:
7B80
Keywords:
Title:
DeAMPylation complex of monomeric FICD and AMPylated BiP (state 2)
Biological Source:
Source Organism:
Cricetulus griseus (Taxon ID: 10029)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.87 Å
R-Value Free:
0.22
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protein adenylyltransferase FICD
Gene (Uniprot):FICD
Chain IDs:B (auth: A)
Chain Length:343
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Endoplasmic reticulum chaperone BiP
Gene (Uniprot):HSPA5
Mutagens:T229A, V461F
Chain IDs:A (auth: B)
Chain Length:523
Number of Molecules:1
Biological Source:Cricetulus griseus
Primary Citation
Structures of a deAMPylation complex rationalise the switch between antagonistic catalytic activities of FICD.
Nat Commun 12 5004 5004 (2021)
PMID: 34408154 DOI: 10.1038/s41467-021-25076-7

Abstact

The endoplasmic reticulum (ER) Hsp70 chaperone BiP is regulated by AMPylation, a reversible inactivating post-translational modification. Both BiP AMPylation and deAMPylation are catalysed by a single ER-localised enzyme, FICD. Here we present crystallographic and solution structures of a deAMPylation Michaelis complex formed between mammalian AMPylated BiP and FICD. The latter, via its tetratricopeptide repeat domain, binds a surface that is specific to ATP-state Hsp70 chaperones, explaining the exquisite selectivity of FICD for BiP's ATP-bound conformation both when AMPylating and deAMPylating Thr518. The eukaryotic deAMPylation mechanism thus revealed, rationalises the role of the conserved Fic domain Glu234 as a gatekeeper residue that both inhibits AMPylation and facilitates hydrolytic deAMPylation catalysed by dimeric FICD. These findings point to a monomerisation-induced increase in Glu234 flexibility as the basis of an oligomeric state-dependent switch between FICD's antagonistic activities, despite a similar mode of engagement of its two substrates - unmodified and AMPylated BiP.

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