7B39 image
Entry Detail
PDB ID:
7B39
Keywords:
Title:
Allene-Based Design of a Noncalcemic Vitamin D Receptor Agonist
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2020-11-29
Release Date:
2021-09-01
Method Details:
Experimental Method:
Resolution:
2.13 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 65 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Vitamin D3 receptor A
Chain IDs:A
Chain Length:302
Number of Molecules:1
Biological Source:Danio rerio
Polymer Type:polypeptide(L)
Description:Nuclear receptor coactivator 1
Chain IDs:B
Chain Length:15
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Design, Synthesis, Evaluation and Structure of Allenic 1 alpha ,25-Dihydroxyvitamin D 3 Analogs with Locked Mobility at C-17.
Chemistry 27 13384 13389 (2021)
PMID: 34224173 DOI: 10.1002/chem.202101578

Abstact

Vitamin D receptor ligands have potential for the treatment of hyperproliferative diseases and disorders related to the immune system. However, hypercalcemic effects limit their therapeutical uses and call for the development of tissue-selective new analogs. We have designed and synthesized the first examples of 1α,25-dihydroxyvitamin D3 analogs bearing an allenic unit attached to the D ring to restrict the side-chain conformational mobility. The triene system was constructed by a Pd0 -mediated cyclization/Suzuki-Miyaura cross-coupling process in the presence of an allenic side chain. The allenic moiety was built through an orthoester-Claisen rearrangement of a propargylic alcohol. The biological activity and structure of (22S)-1α,25-dihydroxy-17,20-dien-24-homo-21-nor-vitamin D3 bound to binding domain of the vitamin D receptor, provide information concerning side-chain conformational requirements for biological activity.

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