7B2T image
Entry Detail
PDB ID:
7B2T
Title:
Crystal structure of Iripin-5 serpin from Ixodes ricinus
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2020-11-27
Release Date:
2021-10-06
Method Details:
Experimental Method:
Resolution:
1.50 Å
R-Value Free:
0.18
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Serpin-4 precursor, putative
Chain IDs:A, B
Chain Length:342
Number of Molecules:2
Biological Source:Ixodes scapularis
Polymer Type:polypeptide(L)
Description:Serpin-4 precursor, putative
Chain IDs:C (auth: aa), D (auth: bb)
Chain Length:31
Number of Molecules:2
Biological Source:Ixodes scapularis
Primary Citation
Structural and biochemical characterization of the novel serpin Iripin-5 from Ixodes ricinus.
Acta Crystallogr D Struct Biol 77 1183 1196 (2021)
PMID: 34473088 DOI: 10.1107/S2059798321007920

Abstact

Iripin-5 is the main Ixodes ricinus salivary serpin, which acts as a modulator of host defence mechanisms by impairing neutrophil migration, suppressing nitric oxide production by macrophages and altering complement functions. Iripin-5 influences host immunity and shows high expression in the salivary glands. Here, the crystal structure of Iripin-5 in the most thermodynamically stable state of serpins is described. In the reactive-centre loop, the main substrate-recognition site of Iripin-5 is likely to be represented by Arg342, which implies the targeting of trypsin-like proteases. Furthermore, a computational structural analysis of selected Iripin-5-protease complexes together with interface analysis revealed the most probable residues of Iripin-5 involved in complex formation.

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