7B1Q image
Entry Detail
PDB ID:
7B1Q
Keywords:
Title:
Crystal Structure of Human BACE-1 in Complex with Compound NB-360 (compound 54)
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2020-11-25
Release Date:
2021-04-28
Method Details:
Experimental Method:
Resolution:
1.94 Å
R-Value Free:
0.21
R-Value Work:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Beta-secretase 1
Chain IDs:A
Chain Length:402
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Synthesis of the Potent, Selective, and Efficacious beta-Secretase (BACE1) Inhibitor NB-360.
J.Med.Chem. 64 4677 4696 (2021)
PMID: 33844524 DOI: 10.1021/acs.jmedchem.0c02143

Abstact

Starting from lead compound 4, the 1,4-oxazine headgroup was optimized to improve potency and brain penetration. Focusing at the 6-position of the 5-amino-1,4-oxazine, the insertion of a Me and a CF3 group delivered an excellent pharmacological profile with a pKa of 7.1 and a very low P-gp efflux ratio enabling high central nervous system (CNS) penetration and exposure. Various synthetic routes to access BACE1 inhibitors bearing a 5-amino-6-methyl-6-(trifluoromethyl)-1,4-oxazine headgroup were investigated. Subsequent optimization of the P3 fragment provided the highly potent N-(3-((3R,6R)-5-amino-3,6-dimethyl-6-(trifluoromethyl)-3,6-dihydro-2H-1,4-oxazin-3-yl)-4-fluorophenyl)-5-cyano-3-methylpicolinamide 54 (NB-360), able to reduce significantly Aβ levels in mice, rats, and dogs in acute and chronic treatment regimens.

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