7AZ0 image
Deposition Date 2020-11-13
Release Date 2022-06-01
Last Version Date 2024-01-31
Entry Detail
PDB ID:
7AZ0
Title:
Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with TH12161
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.25
R-Value Work:
0.22
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:N-glycosylase/DNA lyase
Gene (Uniprot):Ogg1
Chain IDs:A (auth: AAA), B (auth: BBB), C (auth: CCC)
Chain Length:318
Number of Molecules:3
Biological Source:Mus musculus
Primary Citation

Abstact

Oxidative DNA damage is recognized by 8-oxoguanine (8-oxoG) DNA glycosylase 1 (OGG1), which excises 8-oxoG, leaving a substrate for apurinic endonuclease 1 (APE1) and initiating repair. Here, we describe a small molecule (TH10785) that interacts with the phenylalanine-319 and glycine-42 amino acids of OGG1, increases the enzyme activity 10-fold, and generates a previously undescribed β,δ-lyase enzymatic function. TH10785 controls the catalytic activity mediated by a nitrogen base within its molecular structure. In cells, TH10785 increases OGG1 recruitment to and repair of oxidative DNA damage. This alters the repair process, which no longer requires APE1 but instead is dependent on polynucleotide kinase phosphatase (PNKP1) activity. The increased repair of oxidative DNA lesions with a small molecule may have therapeutic applications in various diseases and aging.

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Primary Citation of related structures