7AYV image
Deposition Date 2020-11-13
Release Date 2021-08-18
Last Version Date 2024-01-31
Entry Detail
PDB ID:
7AYV
Keywords:
Title:
X-ray crystallographic structure of (6-4)photolyase from Drosophila melanogaster at cryogenic temperature
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.79 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RE11660p
Gene (Uniprot):phr6-4
Chain IDs:A
Chain Length:502
Number of Molecules:1
Biological Source:Drosophila melanogaster
Primary Citation
The three-dimensional structure of Drosophila melanogaster (6-4) photolyase at room temperature.
Acta Crystallogr D Struct Biol 77 1001 1009 (2021)
PMID: 34342273 DOI: 10.1107/S2059798321005830

Abstact

(6-4) photolyases are flavoproteins that belong to the photolyase/cryptochrome family. Their function is to repair DNA lesions using visible light. Here, crystal structures of Drosophila melanogaster (6-4) photolyase [Dm(6-4)photolyase] at room and cryogenic temperatures are reported. The room-temperature structure was solved to 2.27 Å resolution and was obtained by serial femtosecond crystallography (SFX) using an X-ray free-electron laser. The crystallization and preparation conditions are also reported. The cryogenic structure was solved to 1.79 Å resolution using conventional X-ray crystallography. The structures agree with each other, indicating that the structural information obtained from crystallography at cryogenic temperature also applies at room temperature. Furthermore, UV-Vis absorption spectroscopy confirms that Dm(6-4)photolyase is photoactive in the crystals, giving a green light to time-resolved SFX studies on the protein, which can reveal the structural mechanism of the photoactivated protein in DNA repair.

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Primary Citation of related structures
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