7AX3 image
Deposition Date 2020-11-09
Release Date 2021-11-10
Last Version Date 2025-10-01
Entry Detail
PDB ID:
7AX3
Title:
CryoEM structure of the super-constricted two-start dynamin 1 filament
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.74 Å
Aggregation State:
HELICAL ARRAY
Reconstruction Method:
HELICAL
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dynamin-1
Gene (Uniprot):DNM1
Chain IDs:A (auth: C2), B (auth: D2), C (auth: A2), D (auth: B2), E (auth: A), F (auth: B), G (auth: C), H (auth: D), I (auth: E), J (auth: F), K (auth: G), L (auth: H), M (auth: I), N (auth: J), O (auth: K), P (auth: L), Q (auth: M), R (auth: N), S (auth: O), T (auth: P), U (auth: Q), V (auth: R), W (auth: S), X (auth: T), Y (auth: U), Z (auth: V), AA (auth: W), BA (auth: X), CA (auth: Y), DA (auth: Z), EA (auth: E2), FA (auth: F2), GA (auth: G2), HA (auth: H2), IA (auth: I2), JA (auth: J2)
Chain Length:864
Number of Molecules:36
Biological Source:Homo sapiens
Primary Citation
CryoEM structure of the super-constricted two-start dynamin 1 filament.
Nat Commun 12 5393 5393 (2021)
PMID: 34518553 DOI: 10.1038/s41467-021-25741-x

Abstact

Dynamin belongs to the large GTPase superfamily, and mediates the fission of vesicles during endocytosis. Dynamin molecules are recruited to the neck of budding vesicles to assemble into a helical collar and to constrict the underlying membrane. Two helical forms were observed: the one-start helix in the constricted state and the two-start helix in the super-constricted state. Here we report the cryoEM structure of a super-constricted two-start dynamin 1 filament at 3.74 Å resolution. The two strands are joined by the conserved GTPase dimeric interface. In comparison with the one-start structure, a rotation around Hinge 1 is observed, essential for communicating the chemical power of the GTPase domain and the mechanical force of the Stalk and PH domain onto the underlying membrane. The Stalk interfaces are well conserved and serve as fulcrums for adapting to changing curvatures. Relative to one-start, small rotations per interface accumulate to bring a drastic change in the helical pitch. Elasticity theory rationalizes the diversity of dynamin helical symmetries and suggests corresponding functional significance.

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Primary Citation of related structures
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