ISDA

Deposition Date 2020-10-27

Release Date 2021-11-17

Last Version Date 2025-07-09

Entry Detail

PDB ID:

7ASP

Keywords:

RIBOSOME

Title:

Staphylococcus aureus 70S after 50 minutes incubation at 37C

Biological Source:

Source Organism:

Staphylococcus aureus (Taxon ID: 1280)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

2.86 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L35
Gene (Uniprot):rpmI
Chain IDs:F (auth: 2)
Chain Length:64
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:A0A077UL47 Pfam ID:PF01632

Polymer Type:polyribonucleotide
Molecule:5S rRNA
Chain IDs:C (auth: 3)
Chain Length:114
Number of Molecules:1
Biological Source:Staphylococcus aureus

Protein Blast

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L36
Gene (Uniprot):rpmJ
Chain IDs:G (auth: 4)
Chain Length:37
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:A0A077UGV8 Pfam ID:PF00444

Protein Blast

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L33,50S ribosomal protein L30
Gene (Uniprot):rpmG2, rpmD
Chain IDs:D (auth: A), SA (auth: 1)
Chain Length:105
Number of Molecules:2
Biological Source:Staphylococcus aureus

UniProt ID:A0A077V2P0,W8UVN7 Pfam ID:PF00471, PF00327

Protein Blast

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L34
Gene (Uniprot):rpmH
Chain IDs:E (auth: B)
Chain Length:114
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:W8TQ59 Pfam ID:PF00468

Protein Blast

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L2
Gene (Uniprot):rap
Chain IDs:K (auth: C)
Chain Length:136
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:B3VKN3 Pfam ID:PF00181, PF03947

Protein Blast

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L3
Gene (Uniprot):rplC
Chain IDs:M (auth: D)
Chain Length:215
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:W8U3W0 Pfam ID:PF00297

Protein Blast

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L4
Gene (Uniprot):rplD
Chain IDs:N (auth: E)
Chain Length:206
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:W8TRC7 Pfam ID:PF00573

Protein Blast

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L5
Gene (Uniprot):rplE
Chain IDs:UA (auth: F)
Chain Length:88
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:A0A6G4QK55 Pfam ID:PF00281, PF00673

Protein Blast

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L6
Gene (Uniprot):rplF
Chain IDs:R (auth: G)
Chain Length:83
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:W8U3X2 Pfam ID:PF00347

Protein Blast

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L13
Gene (Uniprot):rplM
Chain IDs:S (auth: H)
Chain Length:145
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:W8TUE6 Pfam ID:PF00572

Protein Blast

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L14
Gene (Uniprot):rplN
Chain IDs:U (auth: I)
Chain Length:122
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:A0A077UUA0 Pfam ID:PF00238

Protein Blast

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L15
Gene (Uniprot):rplO
Chain IDs:X (auth: J)
Chain Length:146
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:A0A077UGA7 Pfam ID:PF00828

Protein Blast

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L16
Gene (Uniprot):rplP
Chain IDs:Z (auth: K)
Chain Length:137
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:A0A077V4G0 Pfam ID:PF00252

Protein Blast

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L17
Gene (Uniprot):rplQ
Chain IDs:AA (auth: L)
Chain Length:120
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:A0A077UG91 Pfam ID:PF01196

Protein Blast

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L18
Gene (Uniprot):rplR
Chain IDs:DA (auth: M)
Chain Length:156
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:W8TRE0 Pfam ID:PF00861

Protein Blast

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L19
Gene (Uniprot):rplS
Chain IDs:FA (auth: N)
Chain Length:95
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:A0A077UVB6 Pfam ID:PF01245

Protein Blast

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L20
Gene (Uniprot):rplT
Chain IDs:HA (auth: O)
Chain Length:130
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:A0A077VMP6 Pfam ID:PF00453

Protein Blast

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L21
Gene (Uniprot):rplU
Chain IDs:JA (auth: P)
Chain Length:102
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:D7URR3 Pfam ID:PF00829

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L22
Chain IDs:LA (auth: Q)
Chain Length:127
Number of Molecules:1
Biological Source:Staphylococcus aureus

Protein Blast

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L23
Gene (Uniprot):rplW
Chain IDs:MA (auth: R)
Chain Length:89
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:W8TUB4 Pfam ID:PF00276

Protein Blast

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L24
Gene (Uniprot):rplX
Chain IDs:NA (auth: S)
Chain Length:103
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:W8TRD5 Pfam ID:PF00467, PF17136

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L25
Chain IDs:OA (auth: T)
Chain Length:94
Number of Molecules:1
Biological Source:Staphylococcus aureus

Protein Blast

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L27
Gene (Uniprot):rpmA
Chain IDs:PA (auth: U)
Chain Length:79
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:A0A077ULC5 Pfam ID:PF01016

Protein Blast

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L28
Gene (Uniprot):rpmB
Chain IDs:QA (auth: V)
Chain Length:49
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:A0A077URJ8 Pfam ID:PF00830

Protein Blast

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L29
Gene (Uniprot):rpmC
Chain IDs:RA (auth: W)
Chain Length:67
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:A0A077W1J5 Pfam ID:PF00831

Polymer Type:polyribonucleotide
Molecule:16S rRNA
Chain IDs:B (auth: X)
Chain Length:1552
Number of Molecules:1
Biological Source:Staphylococcus aureus

Polymer Type:polyribonucleotide
Molecule:23S rRNA
Chain IDs:A (auth: Y)
Chain Length:2923
Number of Molecules:1
Biological Source:Staphylococcus aureus

Polymer Type:polypeptide(L)
Molecule:50S ribosomalprotein L32p
Chain IDs:TA (auth: Z)
Chain Length:47
Number of Molecules:1
Biological Source:Staphylococcus aureus

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S10
Chain IDs:H (auth: a)
Chain Length:80
Number of Molecules:1
Biological Source:Staphylococcus aureus

Protein Blast

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S11
Gene (Uniprot):rpsK
Chain IDs:I (auth: b)
Chain Length:114
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:A0A077UKD6 Pfam ID:PF00411

Protein Blast

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S12
Gene (Uniprot):rpsL
Chain IDs:J (auth: c)
Chain Length:136
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:W8U1C6 Pfam ID:PF00164

Protein Blast

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S13
Gene (Uniprot):rpsM
Chain IDs:L (auth: d)
Chain Length:215
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:W8U8U6 Pfam ID:PF00416

Protein Blast

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S14 type Z
Gene (Uniprot):rpsN_1
Chain IDs:O (auth: e)
Chain Length:206
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:A0A077UGW7 Pfam ID:PF00253

Protein Blast

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S15
Gene (Uniprot):rpsO
Chain IDs:P (auth: f)
Chain Length:88
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:W8U6H8 Pfam ID:PF00312

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S16
Chain IDs:Q (auth: g)
Chain Length:83
Number of Molecules:1
Biological Source:Staphylococcus aureus

Protein Blast

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S17
Gene (Uniprot):rpsQ
Chain IDs:T (auth: h)
Chain Length:145
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:A0A077VLD5 Pfam ID:PF00366

Protein Blast

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S18
Gene (Uniprot):rpsR
Chain IDs:V (auth: i)
Chain Length:122
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:A0A077UZF4 Pfam ID:PF01084

Protein Blast

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S20
Gene (Uniprot):rpsT
Chain IDs:W (auth: j)
Chain Length:146
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:W8UXC3 Pfam ID:PF01649

Protein Blast

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S3
Gene (Uniprot):rpsC
Chain IDs:Y (auth: k)
Chain Length:137
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:A0A077UU26 Pfam ID:PF07650, PF00189

Protein Blast

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S4
Gene (Uniprot):rpsD
Chain IDs:BA (auth: l)
Chain Length:120
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:W8TVK2 Pfam ID:PF00163, PF01479

Protein Blast

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S5
Gene (Uniprot):rpsE
Chain IDs:CA (auth: m)
Chain Length:156
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:W8TUC9 Pfam ID:PF00333, PF03719

Protein Blast

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S6
Gene (Uniprot):rpsF
Chain IDs:EA (auth: n)
Chain Length:95
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:W8TPC6 Pfam ID:PF01250

Protein Blast

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S8
Gene (Uniprot):rpsH
Chain IDs:GA (auth: o)
Chain Length:130
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:W8U8T8 Pfam ID:PF00410

Protein Blast

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S7
Gene (Uniprot):rpsG
Chain IDs:IA (auth: p)
Chain Length:102
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:A0A077VHU6 Pfam ID:PF00177

Protein Blast

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S9
Gene (Uniprot):rpsI
Chain IDs:KA (auth: q)
Chain Length:127
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:A0A1Q4GY48 Pfam ID:PF00380

Ligand Molecules

Primary Citation

Staphylococcus aureus 50S after 30 minutes incubation a 37C

Cimicata, G, Bashan, A, Yonath, A.Show

To Be Published ? ? ? (?)

Primary Citation of related structures