7AS9 image
Deposition Date 2020-10-27
Release Date 2020-12-23
Last Version Date 2024-11-06
Entry Detail
PDB ID:
7AS9
Keywords:
Title:
Bacillus subtilis ribosome-associated quality control complex state A. Ribosomal 50S subunit with peptidyl tRNA in the A/P position and RqcH.
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.50 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Rqc2 homolog RqcH
Gene (Uniprot):rqcH
Chain IDs:A (auth: 0)
Chain Length:597
Number of Molecules:1
Biological Source:Bacillus subtilis (strain 168)
Polymer Type:polyribonucleotide
Molecule:tRNA-Ala-1-1
Chain IDs:B (auth: 2)
Chain Length:76
Number of Molecules:1
Biological Source:Bacillus subtilis subsp. subtilis str. 168
Polymer Type:polyribonucleotide
Molecule:23S rRNA
Chain IDs:C (auth: A)
Chain Length:94
Number of Molecules:1
Biological Source:Bacillus subtilis subsp. subtilis str. 168
Polymer Type:polyribonucleotide
Molecule:5S rRNA
Chain IDs:D (auth: B)
Chain Length:119
Number of Molecules:1
Biological Source:Bacillus subtilis subsp. subtilis str. 168
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L2
Gene (Uniprot):rplB
Chain IDs:E
Chain Length:277
Number of Molecules:1
Biological Source:Bacillus subtilis (strain 168)
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L3
Gene (Uniprot):rplC
Chain IDs:F
Chain Length:209
Number of Molecules:1
Biological Source:Bacillus subtilis (strain 168)
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L4
Gene (Uniprot):rplD
Chain IDs:G
Chain Length:207
Number of Molecules:1
Biological Source:Bacillus subtilis (strain 168)
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L5
Gene (Uniprot):rplE
Chain IDs:H
Chain Length:44
Number of Molecules:1
Biological Source:Bacillus subtilis (strain 168)
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L6
Gene (Uniprot):rplF
Chain IDs:I
Chain Length:179
Number of Molecules:1
Biological Source:Bacillus subtilis (strain 168)
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L11
Gene (Uniprot):rplK
Chain IDs:J (auth: K)
Chain Length:141
Number of Molecules:1
Biological Source:Bacillus subtilis (strain 168)
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L10
Gene (Uniprot):rplJ
Chain IDs:K (auth: L)
Chain Length:166
Number of Molecules:1
Biological Source:Bacillus subtilis (strain 168)
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L13
Gene (Uniprot):rplM
Chain IDs:L (auth: N)
Chain Length:145
Number of Molecules:1
Biological Source:Bacillus subtilis (strain 168)
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L14
Gene (Uniprot):rplN
Chain IDs:M (auth: O)
Chain Length:122
Number of Molecules:1
Biological Source:Bacillus subtilis (strain 168)
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L15
Gene (Uniprot):rplO
Chain IDs:N (auth: P)
Chain Length:146
Number of Molecules:1
Biological Source:Bacillus subtilis (strain 168)
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L16
Gene (Uniprot):rplP
Chain IDs:O (auth: Q)
Chain Length:144
Number of Molecules:1
Biological Source:Bacillus subtilis (strain 168)
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L17
Gene (Uniprot):rplQ
Chain IDs:P (auth: R)
Chain Length:120
Number of Molecules:1
Biological Source:Bacillus subtilis (strain 168)
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L18
Gene (Uniprot):rplR
Chain IDs:Q (auth: S)
Chain Length:120
Number of Molecules:1
Biological Source:Bacillus subtilis (strain 168)
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L19
Gene (Uniprot):rplS
Chain IDs:R (auth: T)
Chain Length:115
Number of Molecules:1
Biological Source:Bacillus subtilis (strain 168)
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L20
Gene (Uniprot):rplT
Chain IDs:S (auth: U)
Chain Length:119
Number of Molecules:1
Biological Source:Bacillus subtilis (strain 168)
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L21
Gene (Uniprot):rplU
Chain IDs:T (auth: V)
Chain Length:102
Number of Molecules:1
Biological Source:Bacillus subtilis (strain 168)
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L22
Gene (Uniprot):rplV
Chain IDs:U (auth: W)
Chain Length:113
Number of Molecules:1
Biological Source:Bacillus subtilis (strain 168)
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L23
Gene (Uniprot):rplW
Chain IDs:V (auth: X)
Chain Length:95
Number of Molecules:1
Biological Source:Bacillus subtilis (strain 168)
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L24
Gene (Uniprot):rplX
Chain IDs:W (auth: Y)
Chain Length:103
Number of Molecules:1
Biological Source:Bacillus subtilis (strain 168)
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L27
Gene (Uniprot):rpmA
Chain IDs:X (auth: a)
Chain Length:94
Number of Molecules:1
Biological Source:Bacillus subtilis (strain 168)
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L28
Gene (Uniprot):rpmB
Chain IDs:Y (auth: b)
Chain Length:119
Number of Molecules:1
Biological Source:Bacillus subtilis (strain 168)
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L29
Gene (Uniprot):rpmC
Chain IDs:Z (auth: c)
Chain Length:66
Number of Molecules:1
Biological Source:Bacillus subtilis (strain 168)
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L30
Gene (Uniprot):rpmD
Chain IDs:AA (auth: d)
Chain Length:59
Number of Molecules:1
Biological Source:Bacillus subtilis (strain 168)
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L32
Gene (Uniprot):rpmF
Chain IDs:BA (auth: f)
Chain Length:209
Number of Molecules:1
Biological Source:Bacillus subtilis (strain 168)
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L33 1
Gene (Uniprot):rpmGA
Chain IDs:CA (auth: g)
Chain Length:207
Number of Molecules:1
Biological Source:Bacillus subtilis (strain 168)
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L34
Gene (Uniprot):rpmH
Chain IDs:DA (auth: h)
Chain Length:44
Number of Molecules:1
Biological Source:Bacillus subtilis (strain 168)
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L35
Gene (Uniprot):rpmI
Chain IDs:EA (auth: i)
Chain Length:179
Number of Molecules:1
Biological Source:Bacillus subtilis (strain 168)
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L36
Gene (Uniprot):rpmJ
Chain IDs:FA (auth: j)
Chain Length:37
Number of Molecules:1
Biological Source:Bacillus subtilis (strain 168)
Ligand Molecules
Primary Citation
Structural Basis for Bacterial Ribosome-Associated Quality Control by RqcH and RqcP.
Mol.Cell 81 115 ? (2021)
PMID: 33259810 DOI: 10.1016/j.molcel.2020.11.002

Abstact

In all branches of life, stalled translation intermediates are recognized and processed by ribosome-associated quality control (RQC) pathways. RQC begins with the splitting of stalled ribosomes, leaving an unfinished polypeptide still attached to the large subunit. Ancient and conserved NEMF family RQC proteins target these incomplete proteins for degradation by the addition of C-terminal "tails." How such tailing can occur without the regular suite of translational components is, however, unclear. Using single-particle cryo-electron microscopy (EM) of native complexes, we show that C-terminal tailing in Bacillus subtilis is mediated by NEMF protein RqcH in concert with RqcP, an Hsp15 family protein. Our structures reveal how these factors mediate tRNA movement across the ribosomal 50S subunit to synthesize polypeptides in the absence of mRNA or the small subunit.

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Primary Citation of related structures