7ARW image
Entry Detail
PDB ID:
7ARW
Keywords:
Title:
Structure of human ARH3 E41A bound to alpha-NAD+ and magnesium
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2020-10-26
Release Date:
2021-06-16
Method Details:
Experimental Method:
Resolution:
1.31 Å
R-Value Free:
0.18
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:ADP-ribose glycohydrolase ARH3
Chain IDs:A, B
Chain Length:349
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Mechanistic insights into the three steps of poly(ADP-ribosylation) reversal.
Nat Commun 12 4581 4581 (2021)
PMID: 34321462 DOI: 10.1038/s41467-021-24723-3

Abstact

Poly(ADP-ribosyl)ation (PAR) is a versatile and complex posttranslational modification composed of repeating units of ADP-ribose arranged into linear or branched polymers. This scaffold is linked to the regulation of many of cellular processes including the DNA damage response, alteration of chromatin structure and Wnt signalling. Despite decades of research, the principles and mechanisms underlying all steps of PAR removal remain actively studied. In this work, we synthesise well-defined PAR branch point molecules and demonstrate that PARG, but not ARH3, can resolve this distinct PAR architecture. Structural analysis of ARH3 in complex with dimeric ADP-ribose as well as an ADP-ribosylated peptide reveal the molecular basis for the hydrolysis of linear and terminal ADP-ribose linkages. We find that ARH3-dependent hydrolysis requires both rearrangement of a catalytic glutamate and induction of an unusual, square-pyramidal magnesium coordination geometry.

Legend

Protein

Chemical

Disease

Primary Citation of related structures