7ARV image
Deposition Date 2020-10-26
Release Date 2020-11-18
Last Version Date 2024-05-15
Entry Detail
PDB ID:
7ARV
Keywords:
DNA
Title:
TwistTower_native-twist
Biological Source:
Source Organism:
synthetic construct (Taxon ID: 32630)
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
7.40 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
7ARV validation report
Macromolecular Entities
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:AB (auth: A0)
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:BB (auth: A1)
Chain Length:48
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:CB (auth: A2)
Chain Length:48
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:DB (auth: A3)
Chain Length:56
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:EB (auth: A4)
Chain Length:45
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:FB (auth: A5)
Chain Length:48
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:GB (auth: A6)
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:HB (auth: A7)
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:IB (auth: A8)
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:JB (auth: A9)
Chain Length:48
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:SCAFFOLD STRAND
Chain IDs:A (auth: AA)
Chain Length:40
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:B (auth: AB)
Chain Length:29
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:C (auth: AC)
Chain Length:40
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:D (auth: AD)
Chain Length:53
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:E (auth: AE)
Chain Length:60
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:F (auth: AF)
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:G (auth: AG)
Chain Length:58
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:H (auth: AH)
Chain Length:60
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:I (auth: AI)
Chain Length:48
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:J (auth: AJ)
Chain Length:60
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:K (auth: AK)
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:L (auth: AL)
Chain Length:40
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:M (auth: AM)
Chain Length:48
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:N (auth: AN)
Chain Length:60
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:O (auth: AO)
Chain Length:48
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:P (auth: AP)
Chain Length:40
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:Q (auth: AQ)
Chain Length:48
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:R (auth: AR)
Chain Length:48
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:S (auth: AS)
Chain Length:40
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:T (auth: AT)
Chain Length:45
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:U (auth: AU)
Chain Length:48
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:V (auth: AV)
Chain Length:40
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:W (auth: AW)
Chain Length:58
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:X (auth: AX)
Chain Length:60
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:Y (auth: AY)
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:Z (auth: AZ)
Chain Length:45
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:AA (auth: Aa)
Chain Length:40
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:BA (auth: Ab)
Chain Length:29
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:CA (auth: Ac)
Chain Length:40
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:DA (auth: Ad)
Chain Length:53
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:EA (auth: Ae)
Chain Length:60
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:FA (auth: Af)
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:GA (auth: Ag)
Chain Length:58
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:HA (auth: Ah)
Chain Length:60
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:IA (auth: Ai)
Chain Length:48
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:JA (auth: Aj)
Chain Length:60
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:KA (auth: Ak)
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:LA (auth: Al)
Chain Length:40
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:MA (auth: Am)
Chain Length:48
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:NA (auth: An)
Chain Length:60
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:OA (auth: Ao)
Chain Length:48
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:PA (auth: Ap)
Chain Length:40
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:QA (auth: Aq)
Chain Length:48
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:RA (auth: Ar)
Chain Length:48
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:SA (auth: As)
Chain Length:40
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:TA (auth: At)
Chain Length:45
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:UA (auth: Au)
Chain Length:48
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:VA (auth: Av)
Chain Length:40
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:WA (auth: Aw)
Chain Length:58
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:XA (auth: Ax)
Chain Length:60
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:YA (auth: Ay)
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:ZA (auth: Az)
Chain Length:45
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:KD (auth: B0)
Chain Length:60
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:LD (auth: B1)
Chain Length:60
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:MD (auth: B2)
Chain Length:40
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:ND (auth: B3)
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:OD (auth: B4)
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:PD (auth: B5)
Chain Length:60
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:QD (auth: B6)
Chain Length:53
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:RD (auth: B7)
Chain Length:48
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:SD (auth: B8)
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:TD (auth: B9)
Chain Length:48
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:KB (auth: BA)
Chain Length:45
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:LB (auth: BB)
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:MB (auth: BC)
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:NB (auth: BD)
Chain Length:48
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:OB (auth: BE)
Chain Length:48
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:PB (auth: BF)
Chain Length:45
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:QB (auth: BG)
Chain Length:40
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:RB (auth: BH)
Chain Length:57
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:SB (auth: BI)
Chain Length:57
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:TB (auth: BJ)
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:UB (auth: BK)
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:VB (auth: BL)
Chain Length:56
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:WB (auth: BM)
Chain Length:56
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:XB (auth: BN)
Chain Length:40
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:YB (auth: BO)
Chain Length:48
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:ZB (auth: BP)
Chain Length:40
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:AC (auth: BQ)
Chain Length:57
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:BC (auth: BR)
Chain Length:48
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:CC (auth: BS)
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:DC (auth: BT)
Chain Length:40
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:EC (auth: BU)
Chain Length:40
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:FC (auth: BV)
Chain Length:58
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:GC (auth: BW)
Chain Length:60
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:HC (auth: BX)
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:IC (auth: BY)
Chain Length:40
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:JC (auth: BZ)
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:KC (auth: Ba)
Chain Length:45
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:LC (auth: Bb)
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:MC (auth: Bc)
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:NC (auth: Bd)
Chain Length:48
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:OC (auth: Be)
Chain Length:48
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:PC (auth: Bf)
Chain Length:45
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:QC (auth: Bg)
Chain Length:40
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:RC (auth: Bh)
Chain Length:57
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:SC (auth: Bi)
Chain Length:57
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:TC (auth: Bj)
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:UC (auth: Bk)
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:VC (auth: Bl)
Chain Length:56
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:WC (auth: Bm)
Chain Length:56
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:XC (auth: Bn)
Chain Length:40
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:YC (auth: Bo)
Chain Length:48
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:ZC (auth: Bp)
Chain Length:40
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:AD (auth: Bq)
Chain Length:57
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:BD (auth: Br)
Chain Length:48
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:CD (auth: Bs)
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:DD (auth: Bt)
Chain Length:40
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:ED (auth: Bu)
Chain Length:40
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:FD (auth: Bv)
Chain Length:58
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:GD (auth: Bw)
Chain Length:60
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:HD (auth: Bx)
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:ID (auth: By)
Chain Length:40
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:JD (auth: Bz)
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:UF (auth: C0)
Chain Length:57
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:VF (auth: C1)
Chain Length:57
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:WF (auth: C2)
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:XF (auth: C3)
Chain Length:48
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:YF (auth: C4)
Chain Length:48
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:ZF (auth: C5)
Chain Length:48
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:AG (auth: C6)
Chain Length:48
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:BG (auth: C7)
Chain Length:40
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:CG (auth: C8)
Chain Length:48
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:DG (auth: C9)
Chain Length:57
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:UD (auth: CA)
Chain Length:48
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:VD (auth: CB)
Chain Length:60
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:WD (auth: CC)
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:XD (auth: CD)
Chain Length:57
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:YD (auth: CE)
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:ZD (auth: CF)
Chain Length:40
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:AE (auth: CG)
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:BE (auth: CH)
Chain Length:40
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:CE (auth: CI)
Chain Length:48
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:DE (auth: CJ)
Chain Length:40
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:EE (auth: CK)
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:FE (auth: CL)
Chain Length:40
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:GE (auth: CM)
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:HE (auth: CN)
Chain Length:56
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:IE (auth: CO)
Chain Length:40
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:JE (auth: CP)
Chain Length:37
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:KE (auth: CQ)
Chain Length:37
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:LE (auth: CR)
Chain Length:60
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:ME (auth: CS)
Chain Length:48
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:NE (auth: CT)
Chain Length:45
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:OE (auth: CU)
Chain Length:37
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:PE (auth: CV)
Chain Length:40
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:QE (auth: CW)
Chain Length:40
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:RE (auth: CX)
Chain Length:57
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:SE (auth: CY)
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:TE (auth: CZ)
Chain Length:48
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:UE (auth: Ca)
Chain Length:48
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:VE (auth: Cb)
Chain Length:60
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:WE (auth: Cc)
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:XE (auth: Cd)
Chain Length:57
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:YE (auth: Ce)
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:ZE (auth: Cf)
Chain Length:40
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:AF (auth: Cg)
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:BF (auth: Ch)
Chain Length:40
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:CF (auth: Ci)
Chain Length:48
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:DF (auth: Cj)
Chain Length:40
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:EF (auth: Ck)
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:FF (auth: Cl)
Chain Length:40
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:GF (auth: Cm)
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:HF (auth: Cn)
Chain Length:56
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:IF (auth: Co)
Chain Length:40
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:JF (auth: Cp)
Chain Length:37
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:KF (auth: Cq)
Chain Length:37
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:LF (auth: Cr)
Chain Length:60
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:MF (auth: Cs)
Chain Length:48
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:NF (auth: Ct)
Chain Length:45
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:OF (auth: Cu)
Chain Length:37
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:PF (auth: Cv)
Chain Length:40
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:QF (auth: Cw)
Chain Length:40
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:RF (auth: Cx)
Chain Length:57
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:SF (auth: Cy)
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:TF (auth: Cz)
Chain Length:48
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:EG (auth: DA)
Chain Length:45
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:FG (auth: DB)
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:GG (auth: DC)
Chain Length:40
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:HG (auth: DD)
Chain Length:45
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:IG (auth: DE)
Chain Length:48
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:JG (auth: DF)
Chain Length:40
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:KG (auth: DG)
Chain Length:48
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:LG (auth: DH)
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:STAPLE STRAND
Chain IDs:MG (auth: DI)
Chain Length:32
Number of Molecules:1
Biological Source:synthetic construct
Ligand Molecules
NA
Primary Citation
Revealing the structures of megadalton-scale DNA complexes with nucleotide resolution.
Nat Commun 11 6229 6229 (2020)
PMID: 33277481 DOI: 10.1038/s41467-020-20020-7

Abstact

The methods of DNA nanotechnology enable the rational design of custom shapes that self-assemble in solution from sets of DNA molecules. DNA origami, in which a long template DNA single strand is folded by many short DNA oligonucleotides, can be employed to make objects comprising hundreds of unique DNA strands and thousands of base pairs, thus in principle providing many degrees of freedom for modelling complex objects of defined 3D shapes and sizes. Here, we address the problem of accurate structural validation of DNA objects in solution with cryo-EM based methodologies. By taking into account structural fluctuations, we can determine structures with improved detail compared to previous work. To interpret the experimental cryo-EM maps, we present molecular-dynamics-based methods for building pseudo-atomic models in a semi-automated fashion. Among other features, our data allows discerning details such as helical grooves, single-strand versus double-strand crossovers, backbone phosphate positions, and single-strand breaks. Obtaining this higher level of detail is a step forward that now allows designers to inspect and refine their designs with base-pair level interventions.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
7ARV