7AOR image
Deposition Date 2020-10-15
Release Date 2021-04-28
Last Version Date 2024-11-20
Entry Detail
PDB ID:
7AOR
Keywords:
Title:
mt-SSU from Trypanosoma cruzi in complex with mt-IF-3.
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.50 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polyribonucleotide
Molecule:RNA (478-MER)
Chain IDs:DB (auth: A), EB (auth: 2)
Chain Length:8129
Number of Molecules:2
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:mS22
Gene (Uniprot):Tc00.1047053508461.340
Chain IDs:SA (auth: Ca)
Chain Length:603
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:Ribosomal_S5_C domain-containing protein
Gene (Uniprot):Tc00.1047053507641.150
Chain IDs:XA (auth: a)
Chain Length:8129
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:mS48
Gene (Uniprot):Tc00.1047053511217.90
Chain IDs:ZA (auth: aa)
Chain Length:1827
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:mS49
Gene (Uniprot):Tc00.1047053509099.80
Chain IDs:S (auth: ab)
Chain Length:1175
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:mS50
Gene (Uniprot):Tc00.1047053510529.30
Chain IDs:R (auth: ac)
Chain Length:1152
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:mS51
Gene (Uniprot):Tc00.1047053508647.220
Chain IDs:T (auth: ad)
Chain Length:810
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:mS53
Gene (Uniprot):Tc00.1047053504881.40
Chain IDs:P (auth: ae)
Chain Length:678
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:mS54
Gene (Uniprot):Tc00.1047053505555.30
Chain IDs:O (auth: af)
Chain Length:677
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:mS55
Gene (Uniprot):Tc00.1047053508409.320
Chain IDs:N (auth: ag)
Chain Length:581
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:mS56
Gene (Uniprot):Tc00.1047053506831.60
Chain IDs:GA (auth: ai)
Chain Length:410
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:mS57
Gene (Uniprot):Tc00.1047053507019.60
Chain IDs:M (auth: aj)
Chain Length:396
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:mS58
Gene (Uniprot):Tc00.1047053510311.160
Chain IDs:L (auth: ak)
Chain Length:314
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:mS59
Gene (Uniprot):Tc00.1047053510943.36
Chain IDs:PA (auth: al)
Chain Length:308
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:mS60
Gene (Uniprot):Tc00.1047053511815.100
Chain IDs:HA (auth: an)
Chain Length:293
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:mS61
Gene (Uniprot):Tc00.1047053510755.80
Chain IDs:FA (auth: ao)
Chain Length:283
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:mS62
Gene (Uniprot):Tc00.1047053511803.50
Chain IDs:EA (auth: ap)
Chain Length:277
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:mS63
Gene (Uniprot):Tc00.1047053508277.200
Chain IDs:DA (auth: aq)
Chain Length:299
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:AKAP7_NLS domain-containing protein
Gene (Uniprot):Tc00.1047053509161.50
Chain IDs:CA (auth: ar)
Chain Length:268
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:mS65
Gene (Uniprot):Tc00.1047053511653.40
Chain IDs:CB (auth: as)
Chain Length:261
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:mS66
Gene (Uniprot):Tc00.1047053507993.33
Chain IDs:BA (auth: at)
Chain Length:259
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:Rhodanese domain-containing protein
Gene (Uniprot):Tc00.1047053506945.170
Chain IDs:K (auth: au)
Chain Length:247
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:mS68
Gene (Uniprot):Tc00.1047053508479.310
Chain IDs:AA (auth: av)
Chain Length:237
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:mS69
Gene (Uniprot):Tc00.1047053509571.10
Chain IDs:J (auth: aw)
Chain Length:186
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:mS70
Gene (Uniprot):Tc00.1047053503823.70
Chain IDs:I (auth: ax)
Chain Length:172
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:mS71
Gene (Uniprot):Tc00.1047053508831.90
Chain IDs:H (auth: ay)
Chain Length:218
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:mS72
Gene (Uniprot):Tc00.1047053510533.100
Chain IDs:G (auth: az)
Chain Length:163
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:bS6m
Gene (Uniprot):Tc00.1047053504105.60
Chain IDs:VA (auth: b)
Chain Length:160
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:mS73
Gene (Uniprot):Tc00.1047053511731.70
Chain IDs:Z (auth: ba)
Chain Length:217
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:mS38
Gene (Uniprot):Tc00.1047053508881.54
Chain IDs:NA (auth: bb)
Chain Length:238
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:mt-iF3
Gene (Uniprot):Tc00.1047053507513.100
Chain IDs:YA (auth: bc)
Chain Length:376
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:MURF5
Chain IDs:WA (auth: bd)
Chain Length:90
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:Ribosome protein S12
Chain IDs:BB (auth: be)
Chain Length:82
Number of Molecules:1
Biological Source:Trypanosoma cruzi
Polymer Type:polypeptide(L)
Molecule:uS8m
Gene (Uniprot):Tc00.1047053506357.110
Chain IDs:X (auth: c)
Chain Length:285
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:uS9m
Gene (Uniprot):Tc00.1047053510515.110
Chain IDs:Y (auth: d)
Chain Length:445
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:uS10m
Gene (Uniprot):Tc00.1047053507941.10
Chain IDs:F (auth: e)
Chain Length:818
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:uS11m
Gene (Uniprot):Tc00.1047053503555.20
Chain IDs:W (auth: f)
Chain Length:325
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:bS21m
Gene (Uniprot):Tc00.1047053506175.80
Chain IDs:TA (auth: g)
Chain Length:193
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:uS14m
Gene (Uniprot):Tc00.1047053508547.40
Chain IDs:E (auth: h)
Chain Length:166
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:uS15m
Gene (Uniprot):Tc00.1047053507949.50
Chain IDs:V (auth: i)
Chain Length:429
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:bS16m
Gene (Uniprot):Tc00.1047053508813.70
Chain IDs:UA (auth: j)
Chain Length:189
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:30S Ribosomal protein S17-like protein
Gene (Uniprot):C3747_1g649
Chain IDs:AB (auth: k)
Chain Length:309
Number of Molecules:1
Biological Source:Trypanosoma cruzi
Polymer Type:polypeptide(L)
Molecule:mS52
Gene (Uniprot):Tc00.1047053504153.190
Chain IDs:Q (auth: l)
Chain Length:714
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:bS18m
Gene (Uniprot):Tc00.1047053510187.110
Chain IDs:U (auth: m)
Chain Length:319
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:uS19
Gene (Uniprot):Tc00.1047053507927.90
Chain IDs:D (auth: n)
Chain Length:172
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:mS23
Gene (Uniprot):Tc00.1047053506739.40
Chain IDs:RA (auth: p)
Chain Length:308
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:mS26
Gene (Uniprot):Tc00.1047053507011.90
Chain IDs:QA (auth: q)
Chain Length:442
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:mS29
Gene (Uniprot):Tc00.1047053507603.50
Chain IDs:C (auth: r)
Chain Length:500
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:mS33
Gene (Uniprot):Tc00.1047053507775.40
Chain IDs:B (auth: s)
Chain Length:180
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:Trafficking protein particle complex subunit
Gene (Uniprot):Tc00.1047053509979.230
Chain IDs:OA (auth: t)
Chain Length:256
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:mS35
Gene (Uniprot):Tc00.1047053511445.130
Chain IDs:A (auth: u)
Chain Length:874
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:mS37
Gene (Uniprot):Tc00.1047053509693.30
Chain IDs:MA (auth: v)
Chain Length:215
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:Protein FYV4, mitochondrial
Gene (Uniprot):Tc00.1047053507711.50
Chain IDs:LA (auth: w)
Chain Length:186
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:Superoxide dismutase, putative
Gene (Uniprot):Tc00.1047053511521.30
Chain IDs:KA (auth: x)
Chain Length:345
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:Sod_Fe_C domain-containing protein
Gene (Uniprot):Tc00.1047053504129.30
Chain IDs:JA (auth: y)
Chain Length:449
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Polymer Type:polypeptide(L)
Molecule:mS47
Gene (Uniprot):Tc00.1047053509747.30
Chain IDs:IA (auth: z)
Chain Length:1181
Number of Molecules:1
Biological Source:Trypanosoma cruzi (strain CL Brener)
Primary Citation
Structure of the mature kinetoplastids mitoribosome and insights into its large subunit biogenesis.
Proc.Natl.Acad.Sci.USA 117 29851 29861 (2020)
PMID: 33168716 DOI: 10.1073/pnas.2011301117

Abstact

Kinetoplastids are unicellular eukaryotic parasites responsible for such human pathologies as Chagas disease, sleeping sickness, and leishmaniasis. They have a single large mitochondrion, essential for the parasite survival. In kinetoplastid mitochondria, most of the molecular machineries and gene expression processes have significantly diverged and specialized, with an extreme example being their mitochondrial ribosomes. These large complexes are in charge of translating the few essential mRNAs encoded by mitochondrial genomes. Structural studies performed in Trypanosoma brucei already highlighted the numerous peculiarities of these mitoribosomes and the maturation of their small subunit. However, several important aspects mainly related to the large subunit (LSU) remain elusive, such as the structure and maturation of its ribosomal RNA. Here we present a cryo-electron microscopy study of the protozoans Leishmania tarentolae and Trypanosoma cruzi mitoribosomes. For both species, we obtained the structure of their mature mitoribosomes, complete rRNA of the LSU, as well as previously unidentified ribosomal proteins. In addition, we introduce the structure of an LSU assembly intermediate in the presence of 16 identified maturation factors. These maturation factors act on both the intersubunit and the solvent sides of the LSU, where they refold and chemically modify the rRNA and prevent early translation before full maturation of the LSU.

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Chemical

Disease

Primary Citation of related structures