7ANE image
Entry Detail
PDB ID:
7ANE
EMDB ID:
Keywords:
Title:
Leishmania Major mitochondrial ribosome
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2020-10-11
Release Date:
2021-06-23
Method Details:
Experimental Method:
Resolution:
3.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polyribonucleotide
Description:Large ribosomal RNA
Chain IDs:A (auth: 2), TD (auth: 1)
Chain Length:16181
Number of Molecules:2
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:Ribosomal protein L3-like protein
Chain IDs:BB (auth: A)
Chain Length:431
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mL42
Chain IDs:QC (auth: Aa)
Chain Length:1813
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:L51_S25_CI-B8 domain-containing protein
Chain IDs:MC (auth: Ab)
Chain Length:1177
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:MRP-L46 domain-containing protein
Chain IDs:HD (auth: Ac)
Chain Length:291
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mL49
Chain IDs:BD (auth: Ad)
Chain Length:811
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mL53
Chain IDs:GD (auth: Ae)
Chain Length:311
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mL63
Chain IDs:ED (auth: Af)
Chain Length:155
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mL59/64
Chain IDs:LD (auth: Ag)
Chain Length:564
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mL68
Chain IDs:ID (auth: Ah)
Chain Length:570
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mL69
Chain IDs:NC (auth: Ai)
Chain Length:379
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mL72
Chain IDs:UC (auth: Aj)
Chain Length:397
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mL73
Chain IDs:ZC (auth: Ak)
Chain Length:323
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mL74
Chain IDs:HC (auth: Al)
Chain Length:346
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mL75
Chain IDs:WC (auth: Am)
Chain Length:313
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mL76
Chain IDs:GC (auth: An)
Chain Length:302
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mL79
Chain IDs:RC (auth: Ao)
Chain Length:284
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mL80
Chain IDs:OC (auth: Ap)
Chain Length:240
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mL82
Chain IDs:XC (auth: Aq)
Chain Length:295
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mL84
Chain IDs:TC (auth: Ar)
Chain Length:282
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mL85
Chain IDs:FD (auth: As)
Chain Length:249
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mL86
Chain IDs:KC (auth: At)
Chain Length:397
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mL87
Chain IDs:PC (auth: Au)
Chain Length:247
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mL88
Chain IDs:DD (auth: Av)
Chain Length:192
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mL89
Chain IDs:EC (auth: Aw)
Chain Length:139
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:LIM zinc-binding domain-containing protein
Chain IDs:MD (auth: Ax)
Chain Length:216
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:C2H2-type domain-containing protein
Chain IDs:KD (auth: Ay)
Chain Length:169
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mL93
Chain IDs:JC (auth: Az)
Chain Length:163
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:uL4m
Chain IDs:CB (auth: B)
Chain Length:435
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mL94
Chain IDs:BC (auth: BA)
Chain Length:167
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mL95
Chain IDs:DC (auth: BB)
Chain Length:156
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mL96
Chain IDs:LC (auth: BC)
Chain Length:147
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mL97
Chain IDs:JD (auth: BD)
Chain Length:102
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mL98
Chain IDs:YC (auth: BE)
Chain Length:118
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mL99
Chain IDs:CD (auth: BF)
Chain Length:109
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mL100
Chain IDs:PD (auth: BG)
Chain Length:1347
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:Peptidyl-prolyl cis-trans isomerase
Chain IDs:VC (auth: BH)
Chain Length:229
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:Peptidyl-prolyl cis-trans isomerase
Chain IDs:IC (auth: BI)
Chain Length:266
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:Putative ribosomal protein L2
Chain IDs:ND (auth: BL)
Chain Length:380
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mL70
Chain IDs:SC (auth: BM)
Chain Length:457
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:Putative ribosomal protein L14
Chain IDs:OD (auth: BO)
Chain Length:190
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mL52
Chain IDs:AD (auth: BP)
Chain Length:254
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:bL31m
Chain IDs:FC (auth: Bj)
Chain Length:185
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:RIBOSOMAL_L9 domain-containing protein
Chain IDs:DB (auth: C)
Chain Length:311
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:uL10m
Chain IDs:EB (auth: D)
Chain Length:204
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:Putative ribosomal protein L11
Chain IDs:FB (auth: E)
Chain Length:822
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L13-like protein
Chain IDs:GB (auth: F)
Chain Length:371
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:Ribosomal_L18e/L15P domain-containing protein
Chain IDs:HB (auth: G)
Chain Length:373
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:Ribosomal_L16 domain-containing protein
Chain IDs:IB (auth: H)
Chain Length:166
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:Putative 50S ribosomal protein L17
Chain IDs:JB (auth: I)
Chain Length:429
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:bL19m
Chain IDs:KB (auth: J)
Chain Length:189
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:bL20m
Chain IDs:LB (auth: K)
Chain Length:312
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:bL21m
Chain IDs:MB (auth: L)
Chain Length:677
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:uL22m
Chain IDs:NB (auth: M)
Chain Length:325
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:uL23m
Chain IDs:OB (auth: N)
Chain Length:171
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:uL24m
Chain IDs:PB (auth: O)
Chain Length:604
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:bL27m
Chain IDs:QB (auth: P)
Chain Length:184
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:bL28m
Chain IDs:RB (auth: Q)
Chain Length:233
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:uL29m
Chain IDs:SB (auth: R)
Chain Length:479
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:uL30m
Chain IDs:TB (auth: S)
Chain Length:179
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:bL32m
Chain IDs:UB (auth: T)
Chain Length:267
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:bL33m
Chain IDs:VB (auth: U)
Chain Length:890
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:UA
Chain IDs:CC (auth: UA)
Chain Length:203
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:UB
Chain IDs:QD (auth: UB)
Chain Length:67
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:UC
Chain IDs:RD (auth: UC)
Chain Length:144
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:UD
Chain IDs:SD (auth: UD)
Chain Length:95
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:bL35m
Chain IDs:WB (auth: V)
Chain Length:214
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:bL36m
Chain IDs:XB (auth: W)
Chain Length:190
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mL38
Chain IDs:YB (auth: X)
Chain Length:268
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mL40
Chain IDs:ZB (auth: Y)
Chain Length:292
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mL41
Chain IDs:AC (auth: Z)
Chain Length:1169
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:Ribosomal_S5_C domain-containing protein
Chain IDs:XA (auth: a)
Chain Length:431
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mS48
Chain IDs:U (auth: aa)
Chain Length:1813
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mS49
Chain IDs:V (auth: ab)
Chain Length:1177
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mS50
Chain IDs:X (auth: ac)
Chain Length:291
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mS51
Chain IDs:Y (auth: ad)
Chain Length:811
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mS53
Chain IDs:J (auth: ae)
Chain Length:311
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:Excreted/secreted protein 15
Chain IDs:S (auth: af)
Chain Length:155
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mS55
Chain IDs:L (auth: ag)
Chain Length:564
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mS56
Chain IDs:OA (auth: ai)
Chain Length:379
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mS57
Chain IDs:M (auth: aj)
Chain Length:397
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mS58
Chain IDs:W (auth: ak)
Chain Length:323
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mS59
Chain IDs:H (auth: am)
Chain Length:313
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mS60
Chain IDs:Z (auth: an)
Chain Length:302
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mS61
Chain IDs:AA (auth: ao)
Chain Length:284
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mS62
Chain IDs:BA (auth: ap)
Chain Length:240
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mS63
Chain IDs:CA (auth: aq)
Chain Length:295
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:AKAP7_NLS domain-containing protein
Chain IDs:MA (auth: ar)
Chain Length:282
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mS65
Chain IDs:DA (auth: as)
Chain Length:249
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mS66
Chain IDs:EA (auth: at)
Chain Length:397
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:Rhodanese domain-containing protein
Chain IDs:G (auth: au)
Chain Length:247
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:Ubiquitin-like domain-containing protein
Chain IDs:NA (auth: av)
Chain Length:192
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mS69
Chain IDs:C (auth: aw)
Chain Length:139
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mS70
Chain IDs:Q (auth: ax)
Chain Length:216
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mS71
Chain IDs:K (auth: ay)
Chain Length:169
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mS72
Chain IDs:P (auth: az)
Chain Length:163
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:bS6m
Chain IDs:WA (auth: b)
Chain Length:435
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mS73
Chain IDs:YA (auth: ba)
Chain Length:167
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:uS3m
Chain IDs:AB (auth: bd)
Chain Length:102
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:uS8m
Chain IDs:TA (auth: c)
Chain Length:311
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:uS9m
Chain IDs:O (auth: d)
Chain Length:204
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:uS10m
Chain IDs:N (auth: e)
Chain Length:822
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:uS11m
Chain IDs:E (auth: f)
Chain Length:371
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:bS21m
Chain IDs:RA (auth: g)
Chain Length:373
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:uS14m
Chain IDs:B (auth: h)
Chain Length:166
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:uS15m
Chain IDs:QA (auth: i)
Chain Length:429
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:bS16m
Chain IDs:KA (auth: j)
Chain Length:189
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:30S Ribosomal protein S17-like protein
Chain IDs:UA (auth: k)
Chain Length:312
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mS52
Chain IDs:LA (auth: l)
Chain Length:677
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:bS18m
Chain IDs:D (auth: m)
Chain Length:325
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:uS19m
Chain IDs:I (auth: n)
Chain Length:171
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mS22
Chain IDs:SA (auth: o)
Chain Length:604
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mS23
Chain IDs:JA (auth: p)
Chain Length:184
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mS26
Chain IDs:VA (auth: q)
Chain Length:233
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mS29
Chain IDs:R (auth: r)
Chain Length:479
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mS33
Chain IDs:F (auth: s)
Chain Length:179
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mS34
Chain IDs:IA (auth: t)
Chain Length:267
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mS35
Chain IDs:T (auth: u)
Chain Length:890
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mS37
Chain IDs:HA (auth: v)
Chain Length:214
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:Protein FYV4, mitochondrial
Chain IDs:GA (auth: w)
Chain Length:190
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:Putative superoxide dismutase
Chain IDs:PA (auth: x)
Chain Length:268
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mS43
Chain IDs:FA (auth: y)
Chain Length:292
Number of Molecules:1
Biological Source:Leishmania major
Polymer Type:polypeptide(L)
Description:mS47
Chain IDs:ZA (auth: z)
Chain Length:1169
Number of Molecules:1
Biological Source:Leishmania major
Primary Citation
Structure of the mature kinetoplastids mitoribosome and insights into its large subunit biogenesis.
Proc.Natl.Acad.Sci.USA 117 29851 29861 (2020)
PMID: 33168716 DOI: 10.1073/pnas.2011301117

Abstact

Kinetoplastids are unicellular eukaryotic parasites responsible for such human pathologies as Chagas disease, sleeping sickness, and leishmaniasis. They have a single large mitochondrion, essential for the parasite survival. In kinetoplastid mitochondria, most of the molecular machineries and gene expression processes have significantly diverged and specialized, with an extreme example being their mitochondrial ribosomes. These large complexes are in charge of translating the few essential mRNAs encoded by mitochondrial genomes. Structural studies performed in Trypanosoma brucei already highlighted the numerous peculiarities of these mitoribosomes and the maturation of their small subunit. However, several important aspects mainly related to the large subunit (LSU) remain elusive, such as the structure and maturation of its ribosomal RNA. Here we present a cryo-electron microscopy study of the protozoans Leishmania tarentolae and Trypanosoma cruzi mitoribosomes. For both species, we obtained the structure of their mature mitoribosomes, complete rRNA of the LSU, as well as previously unidentified ribosomal proteins. In addition, we introduce the structure of an LSU assembly intermediate in the presence of 16 identified maturation factors. These maturation factors act on both the intersubunit and the solvent sides of the LSU, where they refold and chemically modify the rRNA and prevent early translation before full maturation of the LSU.

Legend

Protein

Chemical

Disease

Primary Citation of related structures