7AL7 image
Deposition Date 2020-10-05
Release Date 2022-04-20
Last Version Date 2024-10-16
Entry Detail
PDB ID:
7AL7
Keywords:
Title:
The Crystal Structure of Human IL-18 in Complex With Human IL-18 Binding Protein
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Interleukin-18-binding protein
Gene (Uniprot):IL18BP
Chain IDs:A
Chain Length:172
Number of Molecules:1
Biological Source:Homo sapiens
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Glutathione S-transferase class-mu 26 kDa isozyme,Interleukin-18
Gene (Uniprot):IL18
Chain IDs:B
Chain Length:390
Number of Molecules:1
Biological Source:Schistosoma japonicum, Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
CSO B CYS modified residue
PCA A GLN modified residue
Ligand Molecules
Primary Citation
Structural basis of human IL-18 sequestration by the decoy receptor IL-18 binding protein in inflammation and tumor immunity.
J.Biol.Chem. 298 101908 101908 (2022)
PMID: 35398099 DOI: 10.1016/j.jbc.2022.101908

Abstact

Human Interleukin-18 (IL-18) is an omnipresent proinflammatory cytokine of the IL-1 family with central roles in autoimmune and inflammatory diseases and serves as a staple biomarker in the evaluation of inflammation in physiology and disease, including the inflammatory phase of COVID-19. The sequestration of IL-18 by its soluble decoy receptor IL-18-Binding Protein (IL-18BP) is critical to the regulation of IL-18 activity. Since an imbalance in expression and circulating levels of IL-18 is associated with disease, structural insights into how IL-18BP outcompetes binding of IL-18 by its cognate cell-surface receptors are highly desirable; however, the structure of human IL-18BP in complex with IL-18 has been elusive. Here, we elucidate the sequestration mechanism of human IL-18 mediated by IL-18BP based on the crystal structure of the IL-18:IL-18BP complex. These detailed structural snapshots reveal the interaction landscape leading to the ultra-high affinity of IL-18BP toward IL-18 and identify substantial differences with respect to previously characterized complexes of IL-18 with IL-18BP of viral origin. Furthermore, our structure captured a fortuitous higher-order assembly between IL-18 and IL-18BP coordinated by a disulfide-bond distal to the binding surface connecting IL-18 and IL-18BP molecules from different complexes, resulting in a novel tetramer with 2:2 stoichiometry. This tetrapartite assembly was found to restrain IL-18 activity more effectively than the canonical 1:1 complex. Collectively, our findings provide a framework for innovative, structure-driven therapeutic strategies and further functional interrogation of IL-18 in physiology and disease.

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Primary Citation of related structures