7AJZ image
Deposition Date 2020-09-29
Release Date 2021-10-06
Last Version Date 2024-01-31
Entry Detail
PDB ID:
7AJZ
Keywords:
TRANSFERASE
Title:
The X-ray Structure of L,D-transpeptidase LdtA from Vibrio cholerae in complex with NAG-NAM(tetrapeptide)
Biological Source:
Source Organism:
Vibrio cholerae (Taxon ID: 666)
synthetic construct (Taxon ID: 32630)
Host Organism:
Escherichia coli BL21(DE3)
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
2.98 Å
R-Value Free:
0.26
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
P 21 21 21
7AJZ validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:L,D-transpeptidase YcbB
Chain IDs:A, B
Chain Length:523
Number of Molecules:2
Biological Source:Vibrio cholerae
UniProt ID:Q9KSI8 Pfam ID:PF20142, PF01471, PF03734
Polymer Type:polypeptide(D)
Molecule:NAG-NAM(tetrapeptide)
Chain IDs:C
Chain Length:4
Number of Molecules:1
Biological Source:synthetic construct
Ligand Molecules
AMV
EDO
Primary Citation
The X-ray Structure of L,D-transpeptidase LdtA from Vibrio cholerae in complex with NAG-NAM(tetrapeptide)
To Be Published ? ? ? (?)
Primary Citation of related structures
7AJ9