7ABH image
Entry Detail
PDB ID:
7ABH
EMDB ID:
Keywords:
Title:
Human pre-Bact-2 spliceosome (SF3b/U2 snRNP portion)
Biological Source:
PDB Version:
Deposition Date:
2020-09-07
Release Date:
2020-12-09
Method Details:
Experimental Method:
Resolution:
4.50 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Smad nuclear-interacting protein 1
Chain IDs:L (auth: 0)
Chain Length:396
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:RNA-binding motif protein, X-linked 2
Chain IDs:M (auth: 1)
Chain Length:322
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polyribonucleotide
Description:U2 snRNA
Chain IDs:O (auth: 2)
Chain Length:188
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Splicing factor 3A subunit 3
Chain IDs:E (auth: 4)
Chain Length:501
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:DNA/RNA-binding protein KIN17
Chain IDs:P (auth: 7)
Chain Length:393
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Splicing factor 3B subunit 3
Chain IDs:H (auth: E)
Chain Length:1217
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Splicing factor 3A subunit 2
Chain IDs:D (auth: F)
Chain Length:464
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Cell division cycle 5-like protein
Chain IDs:A (auth: L)
Chain Length:802
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Splicing factor 3B subunit 2
Chain IDs:G (auth: T)
Chain Length:895
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Serine/arginine repetitive matrix protein 1
Chain IDs:N (auth: Y)
Chain Length:904
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polyribonucleotide
Description:MINX M3 pre-mRNA
Chain IDs:C (auth: Z)
Chain Length:230
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polypeptide(L)
Description:Splicing factor 3B subunit 1
Chain IDs:F (auth: u)
Chain Length:1304
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Splicing factor 3B subunit 4
Chain IDs:I (auth: w)
Chain Length:424
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Splicing factor 3B subunit 5
Chain IDs:J (auth: x)
Chain Length:86
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:PHD finger-like domain-containing protein 5A
Chain IDs:B (auth: y)
Chain Length:904
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Splicing factor 3B subunit 6
Chain IDs:K (auth: z)
Chain Length:230
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Mechanism of protein-guided folding of the active site U2/U6 RNA during spliceosome activation.
Science 370 ? ? (2020)
PMID: 33243851 DOI: 10.1126/science.abc3753

Abstact

Spliceosome activation involves extensive protein and RNA rearrangements that lead to formation of a catalytically active U2/U6 RNA structure. At present, little is known about the assembly pathway of the latter and the mechanism whereby proteins aid its proper folding. Here, we report the cryo-electron microscopy structures of two human, activated spliceosome precursors (that is, pre-Bact complexes) at core resolutions of 3.9 and 4.2 angstroms. These structures elucidate the order of the numerous protein exchanges that occur during activation, the mutually exclusive interactions that ensure the correct order of ribonucleoprotein rearrangements needed to form the U2/U6 catalytic RNA, and the stepwise folding pathway of the latter. Structural comparisons with mature Bact complexes reveal the molecular mechanism whereby a conformational change in the scaffold protein PRP8 facilitates final three-dimensional folding of the U2/U6 catalytic RNA.

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Primary Citation of related structures