7ABH image
Deposition Date 2020-09-07
Release Date 2020-12-09
Last Version Date 2024-05-01
Entry Detail
PDB ID:
7ABH
Keywords:
Title:
Human pre-Bact-2 spliceosome (SF3b/U2 snRNP portion)
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
4.50 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Smad nuclear-interacting protein 1
Gene (Uniprot):SNIP1
Chain IDs:L (auth: 0)
Chain Length:396
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RNA-binding motif protein, X-linked 2
Gene (Uniprot):RBMX2
Chain IDs:M (auth: 1)
Chain Length:322
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polyribonucleotide
Molecule:U2 snRNA
Chain IDs:O (auth: 2)
Chain Length:188
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Splicing factor 3A subunit 3
Gene (Uniprot):SF3A3
Chain IDs:E (auth: 4)
Chain Length:501
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA/RNA-binding protein KIN17
Gene (Uniprot):KIN
Chain IDs:P (auth: 7)
Chain Length:393
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Splicing factor 3B subunit 3
Gene (Uniprot):SF3B3
Chain IDs:H (auth: E)
Chain Length:1217
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Splicing factor 3A subunit 2
Gene (Uniprot):SF3A2
Chain IDs:D (auth: F)
Chain Length:464
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cell division cycle 5-like protein
Gene (Uniprot):CDC5L
Chain IDs:A (auth: L)
Chain Length:802
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Splicing factor 3B subunit 2
Gene (Uniprot):SF3B2
Chain IDs:G (auth: T)
Chain Length:895
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Serine/arginine repetitive matrix protein 1
Gene (Uniprot):SRRM1
Chain IDs:N (auth: Y)
Chain Length:904
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polyribonucleotide
Molecule:MINX M3 pre-mRNA
Chain IDs:C (auth: Z)
Chain Length:230
Number of Molecules:1
Biological Source:synthetic construct
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Splicing factor 3B subunit 1
Gene (Uniprot):SF3B1
Chain IDs:F (auth: u)
Chain Length:1304
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Splicing factor 3B subunit 4
Gene (Uniprot):SF3B4
Chain IDs:I (auth: w)
Chain Length:424
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Splicing factor 3B subunit 5
Gene (Uniprot):SF3B5
Chain IDs:J (auth: x)
Chain Length:86
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PHD finger-like domain-containing protein 5A
Gene (Uniprot):PHF5A
Chain IDs:B (auth: y)
Chain Length:904
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Splicing factor 3B subunit 6
Gene (Uniprot):SF3B6
Chain IDs:K (auth: z)
Chain Length:230
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Mechanism of protein-guided folding of the active site U2/U6 RNA during spliceosome activation.
Science 370 ? ? (2020)
PMID: 33243851 DOI: 10.1126/science.abc3753

Abstact

Spliceosome activation involves extensive protein and RNA rearrangements that lead to formation of a catalytically active U2/U6 RNA structure. At present, little is known about the assembly pathway of the latter and the mechanism whereby proteins aid its proper folding. Here, we report the cryo-electron microscopy structures of two human, activated spliceosome precursors (that is, pre-Bact complexes) at core resolutions of 3.9 and 4.2 angstroms. These structures elucidate the order of the numerous protein exchanges that occur during activation, the mutually exclusive interactions that ensure the correct order of ribonucleoprotein rearrangements needed to form the U2/U6 catalytic RNA, and the stepwise folding pathway of the latter. Structural comparisons with mature Bact complexes reveal the molecular mechanism whereby a conformational change in the scaffold protein PRP8 facilitates final three-dimensional folding of the U2/U6 catalytic RNA.

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Primary Citation of related structures