7ABG image
Entry Detail
PDB ID:
7ABG
EMDB ID:
Keywords:
Title:
Human pre-Bact-1 spliceosome
Biological Source:
PDB Version:
Deposition Date:
2020-09-07
Release Date:
2020-12-23
Method Details:
Experimental Method:
Resolution:
7.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Smad nuclear-interacting protein 1
Chain IDs:KA (auth: 0)
Chain Length:396
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polyribonucleotide
Description:U2 snRNA
Chain IDs:S (auth: 2)
Chain Length:188
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Splicing factor 3A subunit 3
Chain IDs:CA (auth: 4)
Chain Length:501
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polyribonucleotide
Description:U5 snRNA
Chain IDs:K (auth: 5)
Chain Length:116
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polyribonucleotide
Description:U6 snRNA
Chain IDs:OA (auth: 6)
Chain Length:106
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:U6 snRNA-associated Sm-like protein LSm3
Chain IDs:O (auth: 9)
Chain Length:102
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Pre-mRNA-processing-splicing factor 8
Chain IDs:Y (auth: A)
Chain Length:118
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Nuclear cap-binding protein subunit 2
Chain IDs:J (auth: A1)
Chain Length:156
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:U6 snRNA-associated Sm-like protein LSm7
Chain IDs:B (auth: A2)
Chain Length:103
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:U6 snRNA-associated Sm-like protein LSm8
Chain IDs:T (auth: A3)
Chain Length:96
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Transcription elongation regulator 1
Chain IDs:DA (auth: A4)
Chain Length:1098
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Nuclear cap-binding protein subunit 1
Chain IDs:A (auth: A5)
Chain Length:790
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Serine/arginine-rich splicing factor 1
Chain IDs:PA (auth: A6)
Chain Length:248
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:U2 small nuclear ribonucleoprotein B''
Chain IDs:G (auth: B)
Chain Length:86
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:U6 snRNA-associated Sm-like protein LSm4
Chain IDs:P (auth: C)
Chain Length:139
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:U5 small nuclear ribonucleoprotein 40 kDa protein
Chain IDs:E (auth: D)
Chain Length:357
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Splicing factor 3B subunit 3
Chain IDs:GA (auth: E)
Chain Length:126
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Splicing factor 3A subunit 2
Chain IDs:D (auth: F)
Chain Length:464
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Pleiotropic regulator 1
Chain IDs:W (auth: G)
Chain Length:119
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:U6 snRNA-associated Sm-like protein LSm5
Chain IDs:Q (auth: H)
Chain Length:91
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Pre-mRNA-splicing factor 38A
Chain IDs:Z (auth: I)
Chain Length:86
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:U6 snRNA-associated Sm-like protein LSm6
Chain IDs:R (auth: J)
Chain Length:92
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Microfibrillar-associated protein 1
Chain IDs:U (auth: K)
Chain Length:76
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Cell division cycle 5-like protein
Chain IDs:L
Chain Length:126
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Zinc finger matrin-type protein 2
Chain IDs:LA (auth: N)
Chain Length:119
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Pre-mRNA-splicing factor RBM22
Chain IDs:AA (auth: P)
Chain Length:793
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Protein BUD31 homolog
Chain IDs:I (auth: Q)
Chain Length:73
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Spliceosome-associated protein CWC15 homolog
Chain IDs:M (auth: R)
Chain Length:972
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Splicing factor 3B subunit 2
Chain IDs:FA (auth: T)
Chain Length:895
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:U6 snRNA-associated Sm-like protein LSm2
Chain IDs:N (auth: V)
Chain Length:536
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:U2 small nuclear ribonucleoprotein A'
Chain IDs:F (auth: W)
Chain Length:424
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:WW domain-binding protein 11
Chain IDs:FB (auth: X)
Chain Length:86
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Serine/arginine repetitive matrix protein 1
Chain IDs:NA (auth: Y)
Chain Length:110
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polyribonucleotide
Description:MINX M3 pre-mRNA
Chain IDs:X (auth: Z)
Chain Length:230
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polypeptide(L)
Description:Small nuclear ribonucleoprotein Sm D2
Chain IDs:QA (auth: h), ZA (auth: a)
Chain Length:118
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Small nuclear ribonucleoprotein F
Chain IDs:RA (auth: i), CB (auth: b)
Chain Length:86
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Small nuclear ribonucleoprotein E
Chain IDs:VA (auth: j), BB (auth: c)
Chain Length:139
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Small nuclear ribonucleoprotein G
Chain IDs:UA (auth: k), DB (auth: d)
Chain Length:357
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Small nuclear ribonucleoprotein Sm D3
Chain IDs:TA (auth: l), AB (auth: e)
Chain Length:126
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Small nuclear ribonucleoprotein-associated proteins B and B'
Chain IDs:SA (auth: m), XA (auth: f)
Chain Length:464
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Small nuclear ribonucleoprotein Sm D1
Chain IDs:WA (auth: n), YA (auth: g)
Chain Length:119
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Splicing factor 3A subunit 1
Chain IDs:BA (auth: p)
Chain Length:793
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Ubiquitin-like protein 5
Chain IDs:EB (auth: q)
Chain Length:73
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:116 kDa U5 small nuclear ribonucleoprotein component
Chain IDs:MA (auth: r)
Chain Length:972
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:U5 small nuclear ribonucleoprotein 200 kDa helicase
Chain IDs:H (auth: s)
Chain Length:2136
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Splicing factor 3B subunit 1
Chain IDs:EA (auth: u)
Chain Length:1304
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:SNW domain-containing protein 1
Chain IDs:JA (auth: v)
Chain Length:536
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Splicing factor 3B subunit 4
Chain IDs:HA (auth: w)
Chain Length:424
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Splicing factor 3B subunit 5
Chain IDs:IA (auth: x)
Chain Length:86
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:PHD finger-like domain-containing protein 5A
Chain IDs:V (auth: y)
Chain Length:110
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Splicing factor 3B subunit 6
Chain IDs:C (auth: z)
Chain Length:230
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Mechanism of protein-guided folding of the active site U2/U6 RNA during spliceosome activation.
Science 370 ? ? (2020)
PMID: 33243851 DOI: 10.1126/science.abc3753

Abstact

Spliceosome activation involves extensive protein and RNA rearrangements that lead to formation of a catalytically active U2/U6 RNA structure. At present, little is known about the assembly pathway of the latter and the mechanism whereby proteins aid its proper folding. Here, we report the cryo-electron microscopy structures of two human, activated spliceosome precursors (that is, pre-Bact complexes) at core resolutions of 3.9 and 4.2 angstroms. These structures elucidate the order of the numerous protein exchanges that occur during activation, the mutually exclusive interactions that ensure the correct order of ribonucleoprotein rearrangements needed to form the U2/U6 catalytic RNA, and the stepwise folding pathway of the latter. Structural comparisons with mature Bact complexes reveal the molecular mechanism whereby a conformational change in the scaffold protein PRP8 facilitates final three-dimensional folding of the U2/U6 catalytic RNA.

Legend

Protein

Chemical

Disease

Primary Citation of related structures