7ABF image
Deposition Date 2020-09-07
Release Date 2020-12-09
Last Version Date 2025-04-09
Entry Detail
PDB ID:
7ABF
Keywords:
Title:
Human pre-Bact-1 spliceosome core structure
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polyribonucleotide
Molecule:U5 small nuclear RNA
Chain IDs:H (auth: 5)
Chain Length:116
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polyribonucleotide
Molecule:U6 small nuclear RNA
Chain IDs:I (auth: 6)
Chain Length:106
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Pre-mRNA-processing-splicing factor 8
Gene (Uniprot):PRPF8
Chain IDs:C (auth: A)
Chain Length:2335
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Transcription elongation regulator 1
Gene (Uniprot):TCERG1
Chain IDs:O (auth: A4)
Chain Length:1077
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Pleiotropic regulator 1
Gene (Uniprot):PLRG1
Chain IDs:L (auth: G)
Chain Length:514
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Pre-mRNA-splicing factor 38A
Gene (Uniprot):PRPF38A
Chain IDs:B (auth: I)
Chain Length:312
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Microfibrillar-associated protein 1
Gene (Uniprot):MFAP1
Chain IDs:N (auth: K)
Chain Length:439
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Zinc finger matrin-type protein 2
Gene (Uniprot):ZMAT2
Chain IDs:E (auth: N)
Chain Length:199
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Protein BUD31 homolog
Gene (Uniprot):BUD31
Chain IDs:A (auth: Q)
Chain Length:73
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Spliceosome-associated protein CWC15 homolog
Gene (Uniprot):CWC15
Chain IDs:G (auth: R)
Chain Length:229
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:WW domain-binding protein 11
Gene (Uniprot):WBP11
Chain IDs:J (auth: X)
Chain Length:641
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polyribonucleotide
Molecule:MINX M3 RNA
Chain IDs:M (auth: Z)
Chain Length:230
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polypeptide(L)
Molecule:Ubiquitin-like protein 5
Gene (Uniprot):UBL5
Chain IDs:F (auth: q)
Chain Length:73
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:116 kDa U5 small nuclear ribonucleoprotein component
Gene (Uniprot):EFTUD2
Chain IDs:D (auth: r)
Chain Length:229
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:SNW domain-containing protein 1
Gene (Uniprot):SNW1
Chain IDs:K (auth: v)
Chain Length:536
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Mechanism of protein-guided folding of the active site U2/U6 RNA during spliceosome activation.
Science 370 ? ? (2020)
PMID: 33243851 DOI: 10.1126/science.abc3753

Abstact

Spliceosome activation involves extensive protein and RNA rearrangements that lead to formation of a catalytically active U2/U6 RNA structure. At present, little is known about the assembly pathway of the latter and the mechanism whereby proteins aid its proper folding. Here, we report the cryo-electron microscopy structures of two human, activated spliceosome precursors (that is, pre-Bact complexes) at core resolutions of 3.9 and 4.2 angstroms. These structures elucidate the order of the numerous protein exchanges that occur during activation, the mutually exclusive interactions that ensure the correct order of ribonucleoprotein rearrangements needed to form the U2/U6 catalytic RNA, and the stepwise folding pathway of the latter. Structural comparisons with mature Bact complexes reveal the molecular mechanism whereby a conformational change in the scaffold protein PRP8 facilitates final three-dimensional folding of the U2/U6 catalytic RNA.

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