7A79 image
Entry Detail
PDB ID:
7A79
Title:
Crystal structure of RXR gamma LBD in complexes with palmitic acid and GRIP-1 peptide
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2020-08-27
Release Date:
2020-10-21
Method Details:
Experimental Method:
Resolution:
2.05 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Retinoic acid receptor RXR-gamma
Chain IDs:A, B
Chain Length:233
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Nuclear receptor coactivator 2
Chain IDs:C, D
Chain Length:14
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Comprehensive Set of Tertiary Complex Structures and Palmitic Acid Binding Provide Molecular Insights into Ligand Design for RXR Isoforms.
Int J Mol Sci 21 ? ? (2020)
PMID: 33187070 DOI: 10.3390/ijms21228457

Abstact

The retinoid X receptor (RXR) is a ligand-sensing transcription factor acting mainly as a universal heterodimer partner for other nuclear receptors. Despite presenting as a potential therapeutic target for cancer and neurodegeneration, adverse effects typically observed for RXR agonists, likely due to the lack of isoform selectivity, limit chemotherapeutic application of currently available RXR ligands. The three human RXR isoforms exhibit different expression patterns; however, they share high sequence similarity, presenting a major obstacle toward the development of subtype-selective ligands. Here, we report the discovery of the saturated fatty acid, palmitic acid, as an RXR ligand and disclose a uniform set of crystal structures of all three RXR isoforms in an active conformation induced by palmitic acid. A structural comparison revealed subtle differences among the RXR subtypes. We also observed an ability of palmitic acid as well as myristic acid and stearic acid to induce recruitment of steroid receptor co-activator 1 to the RXR ligand-binding domain with low micromolar potencies. With the high, millimolar endogenous concentrations of these highly abundant lipids, our results suggest their potential involvement in RXR signaling.

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