7A24 image
Deposition Date 2020-08-16
Release Date 2020-10-28
Last Version Date 2024-10-09
Entry Detail
PDB ID:
7A24
Title:
Assembly intermediate of the plant mitochondrial complex I
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:51kDa
Chain IDs:A
Chain Length:486
Number of Molecules:1
Biological Source:Brassica oleracea
Polymer Type:polypeptide(L)
Molecule:24kDa
Chain IDs:R (auth: B)
Chain Length:255
Number of Molecules:1
Biological Source:Brassica oleracea
Polymer Type:polypeptide(L)
Molecule:75kDa
Chain IDs:O (auth: C)
Chain Length:748
Number of Molecules:1
Biological Source:Brassica oleracea
Polymer Type:polypeptide(L)
Molecule:TYKY
Chain IDs:X (auth: D)
Chain Length:222
Number of Molecules:1
Biological Source:Brassica oleracea
Polymer Type:polypeptide(L)
Molecule:PSST
Chain IDs:W (auth: E)
Chain Length:218
Number of Molecules:1
Biological Source:Brassica oleracea
Polymer Type:polypeptide(L)
Molecule:Nad9m
Chain IDs:Q (auth: F)
Chain Length:190
Number of Molecules:1
Biological Source:Brassica oleracea
Polymer Type:polypeptide(L)
Molecule:Nad7m
Chain IDs:N (auth: G)
Chain Length:394
Number of Molecules:1
Biological Source:Brassica oleracea
Polymer Type:polypeptide(L)
Molecule:Nad1m
Chain IDs:E (auth: H)
Chain Length:325
Number of Molecules:1
Biological Source:Brassica oleracea
Polymer Type:polypeptide(L)
Molecule:Nad2m
Chain IDs:B (auth: I)
Chain Length:81
Number of Molecules:1
Biological Source:Brassica oleracea
Polymer Type:polypeptide(L)
Molecule:Nad3m
Chain IDs:C (auth: J)
Chain Length:83
Number of Molecules:1
Biological Source:Brassica oleracea
Polymer Type:polypeptide(L)
Molecule:Nad4Lm
Chain IDs:F (auth: K)
Chain Length:122
Number of Molecules:1
Biological Source:Brassica oleracea
Polymer Type:polypeptide(L)
Molecule:Nad6m
Chain IDs:D (auth: N)
Chain Length:205
Number of Molecules:1
Biological Source:Brassica oleracea
Polymer Type:polypeptide(L)
Molecule:18kDa
Chain IDs:S (auth: O)
Chain Length:154
Number of Molecules:1
Biological Source:Brassica oleracea
Polymer Type:polypeptide(L)
Molecule:13kDa
Chain IDs:T (auth: P)
Chain Length:110
Number of Molecules:1
Biological Source:Brassica oleracea
Polymer Type:polypeptide(L)
Molecule:B8
Chain IDs:AA (auth: Q)
Chain Length:275
Number of Molecules:1
Biological Source:Brassica oleracea
Polymer Type:polypeptide(L)
Molecule:B13
Chain IDs:U (auth: R)
Chain Length:169
Number of Molecules:1
Biological Source:Brassica oleracea
Polymer Type:polypeptide(L)
Molecule:B14.5a
Chain IDs:K (auth: S)
Chain Length:131
Number of Molecules:1
Biological Source:Brassica oleracea
Polymer Type:polypeptide(L)
Molecule:39kDa
Chain IDs:P (auth: T)
Chain Length:402
Number of Molecules:1
Biological Source:Brassica oleracea
Polymer Type:polypeptide(L)
Molecule:B17.2
Chain IDs:V (auth: U)
Chain Length:159
Number of Molecules:1
Biological Source:Brassica oleracea
Polymer Type:polypeptide(L)
Molecule:MWFE
Chain IDs:I (auth: V)
Chain Length:65
Number of Molecules:1
Biological Source:Brassica oleracea
Polymer Type:polypeptide(L)
Molecule:B9
Chain IDs:J (auth: W)
Chain Length:65
Number of Molecules:1
Biological Source:Brassica oleracea
Polymer Type:polypeptide(L)
Molecule:B14
Chain IDs:Y (auth: X)
Chain Length:133
Number of Molecules:1
Biological Source:Brassica oleracea
Polymer Type:polypeptide(L)
Molecule:PGIV
Chain IDs:G (auth: Y)
Chain Length:106
Number of Molecules:1
Biological Source:Brassica oleracea
Polymer Type:polypeptide(L)
Molecule:B16.6
Chain IDs:H (auth: Z)
Chain Length:610
Number of Molecules:1
Biological Source:Brassica oleracea
Polymer Type:polypeptide(L)
Molecule:MNLL
Chain IDs:Z (auth: c)
Chain Length:748
Number of Molecules:1
Biological Source:Brassica oleracea
Polymer Type:polypeptide(L)
Molecule:B14.5b
Chain IDs:L (auth: i)
Chain Length:81
Number of Molecules:1
Biological Source:Brassica oleracea
Polymer Type:polypeptide(L)
Molecule:15kDa
Chain IDs:M (auth: j)
Chain Length:83
Number of Molecules:1
Biological Source:Brassica oleracea
Polymer Type:polypeptide(L)
Molecule:ACPM1
Chain IDs:BA (auth: k)
Chain Length:122
Number of Molecules:1
Biological Source:Brassica oleracea
Polymer Type:polypeptide(L)
Molecule:P2
Chain IDs:DA (auth: n)
Chain Length:205
Number of Molecules:1
Biological Source:Brassica oleracea
Polymer Type:polypeptide(L)
Molecule:CAL1
Chain IDs:EA (auth: o)
Chain Length:154
Number of Molecules:1
Biological Source:Brassica oleracea
Polymer Type:polypeptide(L)
Molecule:CA1
Chain IDs:FA (auth: q), GA (auth: p)
Chain Length:110
Number of Molecules:2
Biological Source:Brassica oleracea
Polymer Type:polypeptide(L)
Molecule:Unk1
Chain IDs:CA (auth: r)
Chain Length:169
Number of Molecules:1
Biological Source:Brassica oleracea
Polymer Type:polypeptide(L)
Molecule:GLDH
Chain IDs:HA (auth: z)
Chain Length:610
Number of Molecules:1
Biological Source:Brassica oleracea
Primary Citation
Specific features and assembly of the plant mitochondrial complex I revealed by cryo-EM.
Nat Commun 11 5195 5195 (2020)
PMID: 33060577 DOI: 10.1038/s41467-020-18814-w

Abstact

Mitochondria are the powerhouses of eukaryotic cells and the site of essential metabolic reactions. Complex I or NADH:ubiquinone oxidoreductase is the main entry site for electrons into the mitochondrial respiratory chain and constitutes the largest of the respiratory complexes. Its structure and composition vary across eukaryote species. However, high resolution structures are available only for one group of eukaryotes, opisthokonts. In plants, only biochemical studies were carried out, already hinting at the peculiar composition of complex I in the green lineage. Here, we report several cryo-electron microscopy structures of the plant mitochondrial complex I. We describe the structure and composition of the plant respiratory complex I, including the ancestral mitochondrial domain composed of the carbonic anhydrase. We show that the carbonic anhydrase is a heterotrimeric complex with only one conserved active site. This domain is crucial for the overall stability of complex I as well as a peculiar lipid complex composed of cardiolipin and phosphatidylinositols. Moreover, we also describe the structure of one of the plant-specific complex I assembly intermediates, lacking the whole PD module, in presence of the maturation factor GLDH. GLDH prevents the binding of the plant specific P1 protein, responsible for the linkage of the PP to the PD module.

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Primary Citation of related structures