6ZZ9 image
Deposition Date 2020-08-04
Release Date 2021-08-18
Last Version Date 2024-06-19
Entry Detail
PDB ID:
6ZZ9
Title:
Crystal structure of CbpB from Streptococcus agalactiae
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.64 Å
R-Value Free:
0.25
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:CBS domain-containing protein
Gene (Uniprot):ykuL
Chain IDs:A, B
Chain Length:176
Number of Molecules:2
Biological Source:Streptococcus agalactiae
Primary Citation
The c-di-AMP-binding protein CbpB modulates the level of ppGpp alarmone in Streptococcus agalactiae.
Febs J. ? ? ? (2023)
PMID: 36629470 DOI: 10.1111/febs.16724

Abstact

Cyclic di-AMP is an essential signalling molecule in Gram-positive bacteria. This second messenger regulates the osmotic pressure of the cell by interacting directly with the regulatory domains, either RCK_C or CBS domains, of several potassium and osmolyte uptake membrane protein systems. Cyclic di-AMP also targets stand-alone CBS domain proteins such as DarB in Bacillus subtilis and CbpB in Listeria monocytogenes. We show here that the CbpB protein of Group B Streptococcus binds c-di-AMP with a very high affinity. Crystal structures of CbpB reveal the determinants of binding specificity and significant conformational changes occurring upon c-di-AMP binding. Deletion of the cbpB gene alters bacterial growth in low potassium conditions most likely due to a decrease in the amount of ppGpp caused by a loss of interaction between CbpB and Rel, the GTP/GDP pyrophosphokinase.

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Primary Citation of related structures