6ZZ5 image
Entry Detail
PDB ID:
6ZZ5
Keywords:
Title:
Structure of soluble SmhB of the tripartite alpha-pore forming toxin, Smh, from Serratia marcescens.
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2020-08-03
Release Date:
2021-03-31
Method Details:
Experimental Method:
Resolution:
1.84 Å
R-Value Free:
0.22
R-Value Work:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:SmhB
Chain IDs:A (auth: AAA), B (auth: BBB)
Chain Length:366
Number of Molecules:2
Biological Source:Serratia marcescens
Primary Citation
Characterisation of a tripartite alpha-pore forming toxin from Serratia marcescens
Sci Rep 11 6447 ? (2021)
PMID: 33742033 DOI: 10.1038/s41598-021-85726-0

Abstact

Tripartite members of the ClyA family of α-PFTs have recently been identified in a number of pathogenic Gram-negative bacteria, including the human pathogen Serratia marcescens. Structures of a Gram-negative A component and a tripartite α-PFT complete pore are unknown and a mechanism for pore formation is still uncertain. Here we characterise the tripartite SmhABC toxin from S. marcescens and propose a mechanism of pore assembly. We present the structure of soluble SmhA, as well as the soluble and pore forms of SmhB. We show that the β-tongue soluble structure is well conserved in the family and propose two conserved latches between the head and tail domains that are broken on the soluble to pore conformational change. Using the structures of individual components, sequence analysis and docking predictions we illustrate how the A, B and C protomers would assemble on the membrane to produce a complete tripartite α-PFT pore.

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