6ZY0 image
Entry Detail
PDB ID:
6ZY0
Keywords:
Title:
Catabolic reductive dehalogenase NpRdhA, N-terminally tagged, K488Q variant
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2020-07-30
Release Date:
2020-09-16
Method Details:
Experimental Method:
Resolution:
2.13 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Oxidoreductase, NAD-binding/iron-sulfur cluster-binding protein
Mutations:K488Q
Chain IDs:A, B, C
Chain Length:725
Number of Molecules:3
Biological Source:Nitratireductor pacificus pht-3B
Primary Citation
Catabolic Reductive Dehalogenase Substrate Complex Structures Underpin Rational Repurposing of Substrate Scope.
Microorganisms 8 ? ? (2020)
PMID: 32887524 DOI: 10.3390/microorganisms8091344

Abstact

Reductive dehalogenases are responsible for the reductive cleavage of carbon-halogen bonds during organohalide respiration. A variety of mechanisms have been proposed for these cobalamin and [4Fe-4S] containing enzymes, including organocobalt, radical, or cobalt-halide adduct based catalysis. The latter was proposed for the oxygen-tolerant Nitratireductor pacificus pht-3B catabolic reductive dehalogenase (NpRdhA). Here, we present the first substrate bound NpRdhA crystal structures, confirming a direct cobalt-halogen interaction is established and providing a rationale for substrate preference. Product formation is observed in crystallo due to X-ray photoreduction. Protein engineering enables rational alteration of substrate preference, providing a future blue print for the application of this and related enzymes in bioremediation.

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