ISDA: 6ZVK

Deposition Date 2020-07-24

Release Date 2020-12-23

Last Version Date 2024-05-01

Entry Detail

PDB ID:

6ZVK

Keywords:

TRANSLATION

Title:

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Biological Source:

Source Organism:

Halastavi arva RNA virus (Taxon ID: 1088890)
Oryctolagus cuniculus (Taxon ID: 9986)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.49 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L15
Gene (Uniprot):RPL15
Chain IDs:UA (auth: 12)
Chain Length:203
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1T0C1 Pfam ID:PF00827

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L30
Gene (Uniprot):RPL30
Chain IDs:T (auth: 13)
Chain Length:94
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1TDL2 Pfam ID:PF01248

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L27
Gene (Uniprot):RPL27
Chain IDs:VA (auth: 22)
Chain Length:135
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1TXF6 Pfam ID:PF00467, PF01777

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S RIBOSOMAL PROTEIN EL19
Gene (Uniprot):RPL19
Chain IDs:I (auth: 32)
Chain Length:180
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:Q3T0W9 Pfam ID:PF01280

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ribosomal protein
Gene (Uniprot):RPL10A
Chain IDs:WA (auth: 42)
Chain Length:217
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1SKZ8 Pfam ID:PF00687

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uL3
Gene (Uniprot):RPL3
Chain IDs:J (auth: 52)
Chain Length:394
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1TL06 Pfam ID:PF00297

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S RIBOSOMAL PROTEIN EL20
Gene (Uniprot):RPL18A
Chain IDs:K (auth: 62)
Chain Length:175
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:Q3T003 Pfam ID:PF01775

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eL21
Gene (Uniprot):RPL21
Chain IDs:L (auth: 72)
Chain Length:159
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1SHQ2 Pfam ID:PF01157

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L22
Gene (Uniprot):RPL22
Chain IDs:M (auth: 82)
Chain Length:99
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1TSG1 Pfam ID:PF01776

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S RIBOSOMAL PROTEIN UL2
Gene (Uniprot):RPL8
Chain IDs:Z (auth: 92)
Chain Length:244
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1TT27 Pfam ID:PF00181, PF03947

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uL29
Gene (Uniprot):RPL35
Chain IDs:AA (auth: A2)
Chain Length:122
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1SIT5 Pfam ID:PF00831

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:ribosomal protein uS19
Gene (Uniprot):RPS15
Chain IDs:FB (auth: A3)
Chain Length:127
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1U0Q2 Pfam ID:PF00203

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L36
Gene (Uniprot):RPL36
Chain IDs:BA (auth: B2)
Chain Length:102
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1TTQ5 Pfam ID:PF01158

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S RIBOSOMAL PROTEIN US9
Gene (Uniprot):RPS16
Chain IDs:GB (auth: B3)
Chain Length:141
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1SGX4 Pfam ID:PF00380

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L37
Gene (Uniprot):RPL37
Chain IDs:CA (auth: C2)
Chain Length:86
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:U3KPD5 Pfam ID:PF01907

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S RIBOSOMAL PROTEIN ES17
Gene (Uniprot):RPS17
Chain IDs:HB (auth: C3)
Chain Length:206
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1TU13 Pfam ID:PF00833

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:ribosomal protein eL39
Gene (Uniprot):RPL39
Chain IDs:DA (auth: D2)
Chain Length:120
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1SYU7 Pfam ID:PF00832

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S RIBOSOMAL PROTEIN ES21
Chain IDs:IB (auth: D3)
Chain Length:185
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:A0A1Z5KTU7 Pfam ID:PF01249

Polymer Type:polyribonucleotide
Molecule:INTERNAL RIBOSOME ENTRY SITE
Chain IDs:XA (auth: E1)
Chain Length:153
Number of Molecules:1
Biological Source:Halastavi arva RNA virus

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S RIBOSOMAL PROTEIN EL40
Gene (Uniprot):UBA52
Chain IDs:EA (auth: E2)
Chain Length:3920
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:P63048 Pfam ID:PF01020

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:S10_plectin domain-containing protein
Gene (Uniprot):RPS10
Chain IDs:FC (auth: E3)
Chain Length:124
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1T168 Pfam ID:PF03501

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eL42
Gene (Uniprot):RPL36A
Chain IDs:FA (auth: F2)
Chain Length:104
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1T040 Pfam ID:PF00935

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:ribosomal protein uS15
Gene (Uniprot):RPS13
Chain IDs:EC (auth: F3)
Chain Length:150
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1SP51 Pfam ID:PF08069, PF00312

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L5
Chain IDs:GA (auth: G2)
Chain Length:292
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:P19949

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S11
Gene (Uniprot):RPS11
Chain IDs:AB (auth: G3)
Chain Length:153
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1TRM4 Pfam ID:PF16205, PF00366

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:ribosomal protein uS13
Gene (Uniprot):RPS18
Chain IDs:JB (auth: G5)
Chain Length:137
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1TPG3 Pfam ID:PF00416

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uL22
Chain IDs:G (auth: H2)
Chain Length:156
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1SCJ6 Pfam ID:PF00237

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:ribosomal protein uS14
Gene (Uniprot):RPS29
Chain IDs:GC (auth: H3)
Chain Length:53
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1U7M4 Pfam ID:PF00253

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S RIBOSOMAL PROTEIN ES19
Gene (Uniprot):RPS19
Chain IDs:KB (auth: H5)
Chain Length:141
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1TN62 Pfam ID:PF01090

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:ribosomal protein eL43
Gene (Uniprot):RPL37A
Chain IDs:HA (auth: I2)
Chain Length:91
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1SY53 Pfam ID:PF01780

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ribosomal_S10 domain-containing protein
Chain IDs:YA (auth: I3)
Chain Length:104
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:A0A5F9CX53 Pfam ID:PF00338

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S24
Gene (Uniprot):RPS24
Chain IDs:MB (auth: I5)
Chain Length:126
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:A0A5F9CBF4 Pfam ID:PF01282

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S RIBOSOMAL PROTEIN EL28
Gene (Uniprot):RPL28
Chain IDs:IA (auth: J2)
Chain Length:125
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1U7L1 Pfam ID:PF01778

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S15a
Gene (Uniprot):RPS15A
Chain IDs:LB (auth: J5)
Chain Length:129
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1TG89 Pfam ID:PF00410

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S acidic ribosomal protein P0
Gene (Uniprot):RPLP0
Chain IDs:JA (auth: K2)
Chain Length:198
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1SPK4 Pfam ID:PF00466, PF17777

Polymer Type:polyribonucleotide
Molecule:18S RIBOSOMAL RNA
Chain IDs:CB (auth: K3)
Chain Length:1869
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L10 (Predicted)
Gene (Uniprot):RPL10
Chain IDs:KA (auth: L2)
Chain Length:102
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:B7NZQ2 Pfam ID:PF00252

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S27
Gene (Uniprot):RPS27
Chain IDs:NB (auth: L3)
Chain Length:83
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1TZ76 Pfam ID:PF01667

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Uncharacterized protein
Gene (Uniprot):RPL12
Chain IDs:LA (auth: M2)
Chain Length:163
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1SMR7 Pfam ID:PF03946, PF00298

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:ribosomal protein eS25
Gene (Uniprot):RPS25
Chain IDs:OB (auth: M3)
Chain Length:75
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1TDB3 Pfam ID:PF03297

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S5
Gene (Uniprot):RPS5
Chain IDs:ZB (auth: N3)
Chain Length:191
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:U3KMN4 Pfam ID:PF00177

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S RIBOSOMAL PROTEIN ES26
Gene (Uniprot):RPS26
Chain IDs:PB (auth: O3)
Chain Length:98
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:Q56JV1 Pfam ID:PF01283

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S RIBOSOMAL PROTEIN ES7
Gene (Uniprot):RPS7
Chain IDs:DB (auth: P3)
Chain Length:189
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:A6H769 Pfam ID:PF01251

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S RIBOSOMAL PROTEIN ES31
Gene (Uniprot):RPS27A
Chain IDs:QB (auth: Q3)
Chain Length:69
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:P79781 Pfam ID:PF01599

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ribosomal_L6e_N domain-containing protein
Chain IDs:MA (auth: R2)
Chain Length:75
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1U1N5 Pfam ID:PF03868

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S RIBOSOMAL PROTEIN EL18
Gene (Uniprot):RPL18
Chain IDs:H (auth: S2)
Chain Length:187
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:Q07020 Pfam ID:PF17135

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L6
Gene (Uniprot):RPL6
Chain IDs:NA (auth: T2)
Chain Length:201
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1SKF7 Pfam ID:PF01159

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S23
Gene (Uniprot):RPS23
Chain IDs:SB (auth: T3)
Chain Length:141
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1SZ47 Pfam ID:PF00164

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uL30
Gene (Uniprot):RPL7
Chain IDs:OA (auth: U2)
Chain Length:225
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1SV32 Pfam ID:PF08079, PF00327

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S_SA_C domain-containing protein
Chain IDs:TB (auth: U3)
Chain Length:208
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1TJH8 Pfam ID:PF00318

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S RIBOSOMAL PROTEIN EL8
Gene (Uniprot):RPL7A
Chain IDs:PA (auth: V2)
Chain Length:128
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:P62424 Pfam ID:PF01248

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S3a
Gene (Uniprot):RPS3A
Chain IDs:UB (auth: V3)
Chain Length:213
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1SS70 Pfam ID:PF01015

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S RIBOSOMAL PROTEIN UL6
Gene (Uniprot):RPL9
Chain IDs:QA (auth: W2)
Chain Length:199
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1SWI6 Pfam ID:PF00347

Polymer Type:polypeptide(L)
Molecule:S5 DRBM domain-containing protein
Chain IDs:VB (auth: W3)
Chain Length:218
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L10 (Predicted)
Gene (Uniprot):RPL10
Chain IDs:RA (auth: X2)
Chain Length:109
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:B7NZQ2 Pfam ID:PF00252

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60s ribosomal protein l41
Gene (Uniprot):RPL41
Chain IDs:WB (auth: X3)
Chain Length:23
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:A0A087WNH4 Pfam ID:PF05162

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L11
Gene (Uniprot):RPL11
Chain IDs:SA (auth: Y2)
Chain Length:114
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1TUB8 Pfam ID:PF00281, PF00673

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S3
Gene (Uniprot):RPS3
Chain IDs:XB (auth: Y3)
Chain Length:227
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1TNM3 Pfam ID:PF07650, PF00189

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L14
Chain IDs:A (auth: Z2)
Chain Length:138
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1SZ12 Pfam ID:PF01929

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:ribosomal protein RACK1
Gene (Uniprot):RACK1
Chain IDs:RB (auth: a3)
Chain Length:127
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1SJB4 Pfam ID:PF00400

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S RIBOSOMAL PROTEIN US11
Gene (Uniprot):RPS14
Chain IDs:EB (auth: a5)
Chain Length:136
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1T1F0 Pfam ID:PF00411

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L13
Chain IDs:TA (auth: a7)
Chain Length:210
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S6
Gene (Uniprot):RPS6
Chain IDs:AC (auth: b3)
Chain Length:141
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1TM55 Pfam ID:PF01092

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S8
Gene (Uniprot):RPS8
Chain IDs:BC (auth: c3)
Chain Length:206
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1TJW1 Pfam ID:PF01201

Polymer Type:polyribonucleotide
Molecule:5S RIBOSOMAL RNA
Chain IDs:C (auth: d2)
Chain Length:120
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S9 (Predicted)
Gene (Uniprot):RPS9
Chain IDs:CC (auth: d3)
Chain Length:185
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:B7NZS8 Pfam ID:PF00163, PF01479

Polymer Type:polyribonucleotide
Molecule:28S RIBOSOMAL RNA
Chain IDs:B (auth: e2)
Chain Length:3920
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S12
Gene (Uniprot):RPS12
Chain IDs:DC (auth: e3)
Chain Length:124
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1SFR8 Pfam ID:PF01248

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:ribosomal protein eS28
Gene (Uniprot):RPS28
Chain IDs:BB (auth: f3)
Chain Length:150
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1TIB4 Pfam ID:PF01200

Polymer Type:polyribonucleotide
Molecule:5.8S RIBOSOMAL RNA
Chain IDs:D (auth: h2)
Chain Length:156
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S4
Gene (Uniprot):RPS4X
Chain IDs:YB (auth: j3)
Chain Length:262
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1TK17 Pfam ID:PF08071, PF00900, PF00467, PF16121

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eL14
Gene (Uniprot):RPL23
Chain IDs:N (auth: k2)
Chain Length:198
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1T6D1 Pfam ID:PF00238

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L24
Gene (Uniprot):RPL24
Chain IDs:O (auth: l2)
Chain Length:102
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1SE28 Pfam ID:PF01246

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S RIBOSOMAL PROTEIN UL23
Gene (Uniprot):RPL23A
Chain IDs:P (auth: m2)
Chain Length:163
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1SE76 Pfam ID:PF03939, PF00276

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L26
Gene (Uniprot):RPL26
Chain IDs:Q (auth: o2)
Chain Length:134
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1SQH0 Pfam ID:PF16906, PF00467

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S RIBOSOMAL PROTEIN EL38
Gene (Uniprot):RPL38
Chain IDs:E (auth: p2)
Chain Length:69
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1U001 Pfam ID:PF01781

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uL15
Gene (Uniprot):RPL27A
Chain IDs:R (auth: q2)
Chain Length:147
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1SNY0 Pfam ID:PF00828

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L29
Chain IDs:S (auth: r2)
Chain Length:75
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1SGR6 Pfam ID:PF01779

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S RIBOSOMAL PROTEIN ES30
Gene (Uniprot):FAU
Chain IDs:ZA (auth: s3)
Chain Length:43
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:P62866 Pfam ID:PF04758

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:uL4
Gene (Uniprot):RPL4
Chain IDs:U (auth: t2)
Chain Length:201
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1SVW5 Pfam ID:PF00573, PF14374

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eL31
Gene (Uniprot):RPL31
Chain IDs:V (auth: u2)
Chain Length:225
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1SHG0 Pfam ID:PF01198

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eL32
Gene (Uniprot):RPL32
Chain IDs:W (auth: v2)
Chain Length:128
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1TUN8 Pfam ID:PF01655

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S RIBOSOMAL PROTEIN UL13
Gene (Uniprot):GW7_15288
Chain IDs:F (auth: w2)
Chain Length:199
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G5B8P1 Pfam ID:PF00572

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eL33
Gene (Uniprot):RPL35A
Chain IDs:X (auth: x2)
Chain Length:109
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1SF08 Pfam ID:PF01247

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:eL34
Chain IDs:Y (auth: y2)
Chain Length:114
Number of Molecules:1
Biological Source:Oryctolagus cuniculus

UniProt ID:G1TXG5 Pfam ID:PF01199

Ligand Molecules

Primary Citation

The Halastavi arva Virus Intergenic Region IRES Promotes Translation by the Simplest Possible Initiation Mechanism.

Abaeva, I.S, Vicens, Q, Bochler, A, Soufari, H, Simonetti, A, Pestova, T.V, Hashem, Y, Hellen, C.U.T.Show

Cell Rep 33 108476 108476 (2020)

PMID: 33296660 DOI: 10.1016/j.celrep.2020.108476

Abstact

Dicistrovirus intergenic region internal ribosomal entry sites (IGR IRESs) do not require initiator tRNA, an AUG codon, or initiation factors and jumpstart translation from the middle of the elongation cycle via formation of IRES/80S complexes resembling the pre-translocation state. eEF2 then translocates the [codon-anticodon]-mimicking pseudoknot I (PKI) from ribosomal A sites to P sites, bringing the first sense codon into the decoding center. Halastavi árva virus (HalV) contains an IGR that is related to previously described IGR IRESs but lacks domain 2, which enables these IRESs to bind to individual 40S ribosomal subunits. By using in vitro reconstitution and cryoelectron microscopy (cryo-EM), we now report that the HalV IGR IRES functions by the simplest initiation mechanism that involves binding to 80S ribosomes such that PKI is placed in the P site, so that the A site contains the first codon that is directly accessible for decoding without prior eEF2-mediated translocation of PKI.

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Disease

Primary Citation of related structures