6ZUA image
Entry Detail
PDB ID:
6ZUA
Keywords:
Title:
Cu nitrite reductase from Achromobacter cycloclastes: MSOX series at 170K, dose point 4
Biological Source:
PDB Version:
Deposition Date:
2020-07-22
Release Date:
2021-06-23
Method Details:
Experimental Method:
Resolution:
1.14 Å
R-Value Free:
0.15
R-Value Work:
0.12
R-Value Observed:
0.12
Space Group:
P 21 3
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Copper-containing nitrite reductase
Chain IDs:A
Chain Length:334
Number of Molecules:1
Biological Source:Achromobacter cycloclastes
Primary Citation
Nature of the copper-nitrosyl intermediates of copper nitrite reductases during catalysis.
Chem Sci 11 12485 12492 (2020)
PMID: 34094452 DOI: 10.1039/d0sc04797j

Abstact

The design and synthesis of copper complexes that can reduce nitrite to NO has attracted considerable interest. They have been guided by the structural information on the catalytic Cu centre of the widespread enzymes Cu nitrite reductases but the chemically novel side-on binding of NO observed in all crystallographic studies of these enzymes has been questioned in terms of its functional relevance. We show conversion of NO2 - to NO in the crystal maintained at 170 K and present 'molecular movies' defining events during enzyme turnover including the formation of side-on Cu-NO intermediate. DFT modelling suggests that both true {CuNO}11 and formal {CuNO}10 states may occur as side-on forms in an enzymatic active site with the stability of the {CuNO}10 side-on form governed by the protonation state of the histidine ligands. Formation of a copper-nitrosyl intermediate thus needs to be accommodated in future design templates for functional synthetic Cu-NiR complexes.

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Primary Citation of related structures