ISDA

Deposition Date 2020-07-17

Release Date 2021-07-28

Last Version Date 2024-05-01

Entry Detail

PDB ID:

6ZTC

Keywords:

ISOMERASE

Title:

CRYSTAL STRUCTURE OF PROSTAGLANDIN D2 SYNTHASE IN COMPLEX WITH FRAGMENT 1A AT 1.84A RESOLUTION.

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.84 Å

R-Value Free:

0.22

R-Value Work:

0.16

R-Value Observed:

0.16

Space Group:

P 1 21 1

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Hematopoietic prostaglandin D synthase
Gene (Uniprot):HPGDS
Chain IDs:A, B
Chain Length:200
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:O60760 Pfam ID:PF02798, PF14497 EC:2.5.1.18

Ligand Molecules

GOL

GSH

QPN

Primary Citation

A knowledge-based, structural-aided discovery of a novel class of 2-phenylimidazo[1,2-a]pyridine-6-carboxamide H-PGDS inhibitors.

Schulte, C.A, Deaton, D.N, Diaz, E, Do, Y, Gampe, R.T, Guss, J.H, Hancock, A.P, Hobbs, H, Hodgson, S.T, Holt, J, Jeune, M.R, Kahler, K.M, Kramer, H.F, Le, J, Mortenson, P.N, Musetti, C, Nolte, R.T, Orband-Miller, L.A, Peckham, G.E, Petrov, K.G, Pietrak, B.L, Poole, C, Price, D.J, Saxty, G, Shillings, A, Smalley Jr, T.L, Somers, D.O, Stewart, E.L, Stuart, J.D, Thomson, S.A.Show

Bioorg.Med.Chem.Lett. 47 128113 128113 (2021)

PMID: 33991628 DOI: 10.1016/j.bmcl.2021.128113

Abstact

Through an internal virtual screen at GlaxoSmithKline a distinct class of 2-phenylimidazo[1,2-a]pyridine-6-carboxamide H-PGDS inhibitors were discovered. Careful evaluation of crystal structures and SAR led to a novel, potent, and orally active imidazopyridine inhibitor of H-PGDS, 20b. Herein, describes the identification of 2 classes of inhibitors, their syntheses, and their challenges.

Legend

Protein

Chemical

Disease

Primary Citation of related structures