6ZSI image
Deposition Date 2020-07-15
Release Date 2020-09-02
Last Version Date 2024-01-31
Entry Detail
PDB ID:
6ZSI
Keywords:
Title:
The mechanism of activation of the actin binding protein EHBP1 by Rab8 family members.
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.91 Å
R-Value Free:
0.26
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ras-related protein Rab-8A
Gene (Uniprot):RAB8A
Chain IDs:A, B
Chain Length:178
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:EH domain-binding protein 1
Gene (Uniprot):EHBP1
Mutagens:M1116A
Chain IDs:C, D
Chain Length:156
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
The mechanism of activation of the actin binding protein EHBP1 by Rab8 family members.
Nat Commun 11 4187 4187 (2020)
PMID: 32826901 DOI: 10.1038/s41467-020-17792-3

Abstact

EHBP1 is an adaptor protein that regulates vesicular trafficking by recruiting Rab8 family members and Eps15-homology domain-containing proteins 1/2 (EHD1/2). It also links endosomes to the actin cytoskeleton. However, the underlying molecular mechanism of activation of EHBP1 actin-binding activity is unclear. Here, we show that both termini of EHBP1 have membrane targeting potential. EHBP1 associates with PI(3)P, PI(5)P, and phosphatidylserine via its N-terminal C2 domain. We show that in the absence of Rab8 family members, the C-terminal bivalent Mical/EHBP Rab binding (bMERB) domain forms an intramolecular complex with its central calponin homology (CH) domain and auto-inhibits actin binding. Rab8 binding to the bMERB domain relieves this inhibition. We have analyzed the CH:bMERB auto-inhibited complex and the active bMERB:Rab8 complex biochemically and structurally. Together with structure-based mutational studies, this explains how binding of Rab8 frees the CH domain and allows it to interact with the actin cytoskeleton, leading to membrane tubulation.

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