6ZRV image
Entry Detail
PDB ID:
6ZRV
Keywords:
Title:
Crystal Structure of Stabilized Active Plasminogen Activator Inhibitor-1 (PAI-1-W175F) in Complex with an Inhibitory Nanobody (VHH-s-a93, Nb93)
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2020-07-15
Release Date:
2020-08-26
Method Details:
Experimental Method:
Resolution:
1.88 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Plasminogen activator inhibitor 1
Mutations:W175F
Chain IDs:A
Chain Length:379
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:VHH-s-a93 (Nb93)
Chain IDs:B
Chain Length:123
Number of Molecules:1
Biological Source:Vicugna pacos
Primary Citation
Structural Insights into the Mechanism of a Nanobody That Stabilizes PAI-1 and Modulates Its Activity.
Int J Mol Sci 21 ? ? (2020)
PMID: 32824134 DOI: 10.3390/ijms21165859

Abstact

Plasminogen activator inhibitor-1 (PAI-1) is the main physiological inhibitor of tissue-type (tPA) and urokinase-type (uPA) plasminogen activators (PAs). Apart from being critically involved in fibrinolysis and wound healing, emerging evidence indicates that PAI-1 plays an important role in many diseases, including cardiovascular disease, tissue fibrosis, and cancer. Targeting PAI-1 is therefore a promising therapeutic strategy in PAI-1 related pathologies. Despite ongoing efforts no PAI-1 inhibitors were approved to date for therapeutic use in humans. A better understanding of the molecular mechanisms of PAI-1 inhibition is therefore necessary to guide the rational design of PAI-1 modulators. Here, we present a 1.9 Å crystal structure of PAI-1 in complex with an inhibitory nanobody VHH-s-a93 (Nb93). Structural analysis in combination with biochemical characterization reveals that Nb93 directly interferes with PAI-1/PA complex formation and stabilizes the active conformation of the PAI-1 molecule.

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