6ZQO image
Entry Detail
PDB ID:
6ZQO
Title:
EYFP mutant - F165G
Biological Source:
PDB Version:
Deposition Date:
2020-07-10
Release Date:
2021-06-16
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.33
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:G protein/GFP fusion protein
Chain IDs:A
Chain Length:251
Number of Molecules:1
Biological Source:Recombinant vesicular stomatitis Indiana virus rVSV-G/GFP
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
CR2 A THR chromophore
Ligand Molecules
Primary Citation
Amino acid residue at the 165th position tunes EYFP chromophore maturation. A structure-based design.
Comput Struct Biotechnol J 19 2950 2959 (2021)
PMID: 34136094 DOI: 10.1016/j.csbj.2021.05.017

Abstact

For the whole GFP family, a few cases, when a single mutation in the chromophore environment strongly inhibits maturation, were described. Here we study EYFP-F165G - a variant of the enhanced yellow fluorescent protein - obtained by a single F165G replacement, and demonstrated multiple fluorescent states represented by the minor emission peaks in blue and yellow ranges (~470 and ~530 nm), and the major peak at ~330 nm. The latter has been assigned to tryptophan fluorescence, quenched due to excitation energy transfer to the mature chromophore in the parental EYFP protein. EYFP-F165G crystal structure revealed two general independent routes of post-translational chemistry, resulting in two main states of the polypeptide chain with the intact chromophore forming triad (~85%) and mature chromophore (~15%). Our experiments thus highlighted important stereochemical role of the 165th position strongly affecting spectral characteristics of the protein. On the basis of the determined EYFP-F165G three-dimensional structure, new variants with ~ 2-fold improved brightness were engineered.

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Primary Citation of related structures