6ZLR image
Deposition Date 2020-07-01
Release Date 2020-12-23
Last Version Date 2024-10-23
Entry Detail
PDB ID:
6ZLR
Keywords:
Title:
Soaking competent crystal form of the SARS-CoV-2 Receptor Binding Domain (RBD):CR3022 complex.
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.10 Å
R-Value Free:
0.24
R-Value Work:
0.21
Space Group:
P 41 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Spike glycoprotein
Gene (Uniprot):S
Chain IDs:A (auth: EEE), D (auth: AAA), G (auth: DDD)
Chain Length:231
Number of Molecules:3
Biological Source:Severe acute respiratory syndrome coronavirus 2
Polymer Type:polypeptide(L)
Molecule:CR3022 FAB HEAVY CHAIN
Chain IDs:B (auth: HHH), E (auth: BBB), H (auth: FFF)
Chain Length:222
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:CR3022 FAB LIGHT CHAIN
Chain IDs:C (auth: LLL), F (auth: CCC), I (auth: GGG)
Chain Length:221
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
A New Crystal Form of the SARS-CoV-2 Receptor Binding Domain: CR3022 Complex-An Ideal Target for In-Crystal Fragment Screening of the ACE2 Binding Site Surface.
Front Pharmacol 11 615211 615211 (2020)
PMID: 33381049 DOI: 10.3389/fphar.2020.615211

Abstact

In-crystal fragment screening is a powerful tool to chemically probe the surfaces used by proteins to interact, and identify the chemical space worth exploring to design protein-protein inhibitors. A crucial prerequisite is the identification of a crystal form where the target area is exposed and accessible to be probed by fragments. Here we report a crystal form of the SARS-CoV-2 Receptor Binding Domain in complex with the CR3022 antibody where the ACE2 binding site on the Receptor Binding Domain is exposed and accessible. This crystal form of the complex is a valuable tool to develop antiviral molecules that could act by blocking the virus entry in cells.

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Disease

Primary Citation of related structures