ISDA

Deposition Date 2020-06-18

Release Date 2020-12-09

Last Version Date 2024-01-24

Entry Detail

PDB ID:

6ZFW

Keywords:

PROTEIN TRANSPORT

Title:

X-ray structure of the soluble N-terminal domain of T. cruzi PEX-14

Biological Source:

Source Organism:

Trypanosoma cruzi (Taxon ID: 5693)

Host Organism:

Escherichia coli BL21

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.58 Å

R-Value Free:

0.20

R-Value Work:

0.17

R-Value Observed:

0.17

Space Group:

P 1 21 1

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Peroxin-14
Mutations:W at terminus for purification purposes, GAMA from tag
Chain IDs:A, B, C, D, E
Chain Length:70
Number of Molecules:5
Biological Source:Trypanosoma cruzi

UniProt ID:Q4D1H5 Pfam ID:PF04695

Ligand Molecules

ACT

BME

GOL

Primary Citation

Deep learning model predicts water interaction sites on the surface of proteins using limited-resolution data.

Zaucha, J, Softley, C.A, Sattler, M, Frishman, D, Popowicz, G.M.Show

Chem.Commun.(Camb.) 56 15454 15457 (2020)

PMID: 33237041 DOI: 10.1039/d0cc04383d

Abstact

We develop a residual deep learning model, hotWater (https://pypi.org/project/hotWater/), to identify key water interaction sites on proteins for binding models and drug discovery. This is tested on new crystal structures, as well as cryo-EM and NMR structures from the PDB and in crystallographic refinement with promising results.

Legend

Protein

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Disease

Primary Citation of related structures