6Z9M image
Deposition Date 2020-06-04
Release Date 2020-10-07
Last Version Date 2024-11-13
Entry Detail
PDB ID:
6Z9M
Keywords:
Title:
Pseudoatomic model of the pre-fusion conformation of glycoprotein B of Herpes simplex virus 1
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
9.10 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SUBTOMOGRAM AVERAGING
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein B
Mutations:H516P
Chain IDs:A, B, C
Chain Length:904
Number of Molecules:3
Biological Source:Human herpesvirus 1
Ligand Molecules
Primary Citation
The prefusion structure of herpes simplex virus glycoprotein B.
Sci Adv 6 ? ? (2020)
PMID: 32978151 DOI: 10.1126/sciadv.abc1726

Abstact

Cell entry of enveloped viruses requires specialized viral proteins that mediate fusion with the host membrane by substantial structural rearrangements from a metastable pre- to a stable postfusion conformation. This metastability renders the herpes simplex virus 1 (HSV-1) fusion glycoprotein B (gB) highly unstable such that it readily converts into the postfusion form, thereby precluding structural elucidation of the pharmacologically relevant prefusion conformation. By identification of conserved sequence signatures and molecular dynamics simulations, we devised a mutation that stabilized this form. Functionally locking gB allowed the structural determination of its membrane-embedded prefusion conformation at sub-nanometer resolution and enabled the unambiguous fit of all ectodomains. The resulting pseudo-atomic model reveals a notable conservation of conformational domain rearrangements during fusion between HSV-1 gB and the vesicular stomatitis virus glycoprotein G, despite their very distant phylogeny. In combination with our comparative sequence-structure analysis, these findings suggest common fusogenic domain rearrangements in all class III viral fusion proteins.

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