6Z98 image
Deposition Date 2020-06-03
Release Date 2021-06-30
Last Version Date 2024-05-15
Entry Detail
PDB ID:
6Z98
Keywords:
Title:
NMR solution structure of the peach allergen Pru p 1.0101
Biological Source:
Source Organism:
Prunus persica (Taxon ID: 3760)
Method Details:
Experimental Method:
Conformers Calculated:
40
Conformers Submitted:
20
Selection Criteria:
structures with the least restraint violations
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Major allergen Pru p 1
Gene (Uniprot):PR10
Chain IDs:A
Chain Length:159
Number of Molecules:1
Biological Source:Prunus persica
Ligand Molecules
Primary Citation
Structure and Zeatin Binding of the Peach Allergen Pru p 1 .
J.Agric.Food Chem. 69 8120 8129 (2021)
PMID: 34260238 DOI: 10.1021/acs.jafc.1c01876

Abstact

Peach (Prunus persica) is among the fruits most frequently reported to cause food allergies. Allergic reactions commonly result from previous sensitization to the birch pollen allergen Bet v 1, followed by immunological cross-reactivity of IgE antibodies to structurally related proteins in peach. In this study, we present the three-dimensional NMR solution structure of the cross-reactive peach allergen Pru p 1 (isoform Pru p 1.0101). This 17.5 kDa protein adopts the canonical Bet v 1 fold, composed of a seven-stranded β-sheet and three α-helices enclosing an internal cavity. In Pru p 1, the inner surface of the cavity contains an array of hydroxyl-bearing amino acids surrounded by a hydrophobic patch, constituting a docking site for amphiphilic molecules. NMR-guided docking of the cytokinin molecule zeatin to the internal cavity of Pru p 1 provides a structure-based rationale for the effect that zeatin binding has on the protein's RNase activity.

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Primary Citation of related structures