6Z8L image
Entry Detail
PDB ID:
6Z8L
Title:
Alpha-Amylase in complex with probe fragments
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2020-06-02
Release Date:
2020-12-02
Method Details:
Experimental Method:
Resolution:
1.40 Å
R-Value Free:
0.15
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Pancreatic alpha-amylase
Chain IDs:A
Chain Length:496
Number of Molecules:1
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
PCA A GLN modified residue
Peptide-like Molecules
PRD_900001
Primary Citation
Enhancing glycan stability via site-selective fluorination: modulating substrate orientation by molecular design.
Chem Sci 12 1286 1294 (2020)
PMID: 34163891 DOI: 10.1039/d0sc04297h

Abstact

Single site OH → F substitution at the termini of maltotetraose leads to significantly improved hydrolytic stability towards α-amylase and α-glucosidase relative to the natural compound. To explore the effect of molecular editing, selectively modified oligosaccharides were prepared via a convergent α-selective strategy. Incubation experiments in purified α-amylase and α-glucosidase, and in human and murine blood serum, provide insight into the influence of fluorine on the hydrolytic stability of these clinically important scaffolds. Enhancements of ca. 1 order of magnitude result from these subtle single point mutations. Modification at the monosaccharide furthest from the probable enzymatic cleavage termini leads to the greatest improvement in stability. In the case of α-amylase, docking studies revealed that retentive C2-fluorination at the reducing end inverts the orientation in which the substrate is bound. A co-crystal structure of human α-amylase revealed maltose units bound at the active-site. In view of the evolving popularity of C(sp3)-F bioisosteres in medicinal chemistry, and the importance of maltodextrins in bacterial imaging, this discovery begins to reconcile the information-rich nature of carbohydrates with their intrinsic hydrolytic vulnerabilities.

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Primary Citation of related structures