6Z62 image
Deposition Date 2020-05-27
Release Date 2021-04-14
Last Version Date 2024-01-24
Entry Detail
PDB ID:
6Z62
Title:
The RSL - sulfonato-calix[8]arene complex, P213 form, TRIS-HCl pH 8.5
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.16 Å
R-Value Free:
0.16
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 21 3
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Fucose-binding lectin protein
Gene (Uniprot):E7Z57_08365, HF909_06975, LBW55_09125, LBW59_25430, RUN39_v1_50103
Chain IDs:A
Chain Length:90
Number of Molecules:1
Biological Source:Ralstonia solanacearum
Primary Citation
Facile Fabrication of Protein-Macrocycle Frameworks.
J.Am.Chem.Soc. 143 1896 1907 (2021)
PMID: 33470808 DOI: 10.1021/jacs.0c10697

Abstact

Precisely defined protein aggregates, as exemplified by crystals, have applications in functional materials. Consequently, engineered protein assembly is a rapidly growing field. Anionic calix[n]arenes are useful scaffolds that can mold to cationic proteins and induce oligomerization and assembly. Here, we describe protein-calixarene composites obtained via cocrystallization of commercially available sulfonato-calix[8]arene (sclx8) with the symmetric and "neutral" protein RSL. Cocrystallization occurred across a wide range of conditions and protein charge states, from pH 2.2-9.5, resulting in three crystal forms. Cationization of the protein surface at pH ∼ 4 drives calixarene complexation and yielded two types of porous frameworks with pore diameters >3 nm. Both types of framework provide evidence of protein encapsulation by the calixarene. Calixarene-masked proteins act as nodes within the frameworks, displaying octahedral-type coordination in one case. The other framework formed millimeter-scale crystals within hours, without the need for precipitants or specialized equipment. NMR experiments revealed macrocycle-modulated side chain pKa values and suggested a mechanism for pH-triggered assembly. The same low pH framework was generated at high pH with a permanently cationic arginine-enriched RSL variant. Finally, in addition to protein framework fabrication, sclx8 enables de novo structure determination.

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Primary Citation of related structures
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