6Z5S image
Deposition Date 2020-05-27
Release Date 2021-01-13
Last Version Date 2024-10-23
Entry Detail
PDB ID:
6Z5S
Keywords:
Title:
RC-LH1(14)-W complex from Rhodopseudomonas palustris
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.65 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Light-harvesting complex 1 alpha chain
Gene (Uniprot):pufA
Chain IDs:E (auth: 1), G (auth: 5), I (auth: 3), K (auth: Y), M (auth: V), O (auth: T), Q (auth: A), S (auth: C), U (auth: R), W (auth: P), Y (auth: N), AA (auth: J), CA (auth: G), EA (auth: E)
Chain Length:63
Number of Molecules:14
Biological Source:Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
Polymer Type:polypeptide(L)
Molecule:Light-harvesting complex 1 beta chain
Gene (Uniprot):pufB
Chain IDs:F (auth: 2), H (auth: 6), J (auth: 4), L (auth: Z), N (auth: X), P (auth: U), R (auth: B), T (auth: D), V (auth: S), X (auth: Q), Z (auth: O), BA (auth: K), DA (auth: I), FA (auth: F)
Chain Length:65
Number of Molecules:14
Biological Source:Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
Polymer Type:polypeptide(L)
Molecule:H subunit of photosynthetic reaction center complex
Gene (Uniprot):puhA
Chain IDs:D (auth: H)
Chain Length:255
Number of Molecules:1
Biological Source:Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
Polymer Type:polypeptide(L)
Molecule:Reaction center protein L chain
Gene (Uniprot):pufL
Chain IDs:C (auth: L)
Chain Length:277
Number of Molecules:1
Biological Source:Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
Polymer Type:polypeptide(L)
Molecule:Reaction center protein M chain
Gene (Uniprot):pufM
Chain IDs:B (auth: M)
Chain Length:307
Number of Molecules:1
Biological Source:Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
Polymer Type:polypeptide(L)
Molecule:Light harvesting complex 1 Protein W
Gene (Uniprot):TX73_022820
Chain IDs:A (auth: W)
Chain Length:102
Number of Molecules:1
Biological Source:Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
FME E MET modified residue
Primary Citation
Structures of Rhodopseudomonas palustris RC-LH1 complexes with open or closed quinone channels.
Sci Adv 7 ? ? (2021)
PMID: 33523887 DOI: 10.1126/sciadv.abe2631

Abstact

The reaction-center light-harvesting complex 1 (RC-LH1) is the core photosynthetic component in purple phototrophic bacteria. We present two cryo-electron microscopy structures of RC-LH1 complexes from Rhodopseudomonas palustris A 2.65-Å resolution structure of the RC-LH114-W complex consists of an open 14-subunit LH1 ring surrounding the RC interrupted by protein-W, whereas the complex without protein-W at 2.80-Å resolution comprises an RC completely encircled by a closed, 16-subunit LH1 ring. Comparison of these structures provides insights into quinone dynamics within RC-LH1 complexes, including a previously unidentified conformational change upon quinone binding at the RC QB site, and the locations of accessory quinone binding sites that aid their delivery to the RC. The structurally unique protein-W prevents LH1 ring closure, creating a channel for accelerated quinone/quinol exchange.

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Primary Citation of related structures