6Z4S image
Deposition Date 2020-05-25
Release Date 2021-02-10
Last Version Date 2024-11-06
Entry Detail
PDB ID:
6Z4S
Title:
Crystal structure of the neurotensin receptor 1 (NTSR1-H4bmx) in complex with the small molecule inverse agonist SR48692
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.71 Å
R-Value Free:
0.28
R-Value Work:
0.27
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Neurotensin receptor type 1,DARPin,HRV 3C protease recognition sequence
Gene (Uniprot):Ntsr1
Mutagens:S83G,A86L,T101R,H103D,H105Y,L119F,M121L,R143K,A161V,R167L,R213L,V234L,K235R,V240L,I253A,I260A,N262R,K263R,H305R,C332V,F342A,T354S
Chain IDs:A (auth: AAA)
Chain Length:482
Number of Molecules:1
Biological Source:Rattus norvegicus, synthetic construct
Ligand Molecules
Primary Citation
Complexes of the neurotensin receptor 1 with small-molecule ligands reveal structural determinants of full, partial, and inverse agonism.
Sci Adv 7 ? ? (2021)
PMID: 33571132 DOI: 10.1126/sciadv.abe5504

Abstact

Neurotensin receptor 1 (NTSR1) and related G protein-coupled receptors of the ghrelin family are clinically unexploited, and several mechanistic aspects of their activation and inactivation have remained unclear. Enabled by a new crystallization design, we present five new structures: apo-state NTSR1 as well as complexes with nonpeptide inverse agonists SR48692 and SR142948A, partial agonist RTI-3a, and the novel full agonist SRI-9829, providing structural rationales on how ligands modulate NTSR1. The inverse agonists favor a large extracellular opening of helices VI and VII, undescribed so far for NTSR1, causing a constriction of the intracellular portion. In contrast, the full and partial agonists induce a binding site contraction, and their efficacy correlates with the ability to mimic the binding mode of the endogenous agonist neurotensin. Providing evidence of helical and side-chain rearrangements modulating receptor activation, our structural and functional data expand the mechanistic understanding of NTSR1 and potentially other peptidergic receptors.

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Primary Citation of related structures
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