6Z4R image
Deposition Date 2020-05-25
Release Date 2021-04-28
Last Version Date 2024-01-24
Entry Detail
PDB ID:
6Z4R
Title:
sperm whale myoglobin mutant (H64V V64A) bearing the non-canonical amino acid 3-thienylalanine as axial heme ligand
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.96 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.22
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Myoglobin
Gene (Uniprot):MB
Mutations:H64V V68A H93(3ThiA)
Chain IDs:A
Chain Length:154
Number of Molecules:1
Biological Source:Physeter macrocephalus
Ligand Molecules
Primary Citation
Noncanonical Heme Ligands Steer Carbene Transfer Reactivity in an Artificial Metalloenzyme*.
Angew.Chem.Int.Ed.Engl. 60 15063 15068 (2021)
PMID: 33880851 DOI: 10.1002/anie.202103437

Abstact

Changing the primary metal coordination sphere is a powerful strategy for tuning metalloprotein properties. Here we used amber stop codon suppression with engineered pyrrolysyl-tRNA synthetases, including two newly evolved enzymes, to replace the proximal histidine in myoglobin with Nδ -methylhistidine, 5-thiazoylalanine, 4-thiazoylalanine and 3-(3-thienyl)alanine. In addition to tuning the heme redox potential over a >200 mV range, these noncanonical ligands modulate the protein's carbene transfer activity with ethyl diazoacetate. Variants with increased reduction potential proved superior for cyclopropanation and N-H insertion, whereas variants with reduced Eo values gave higher S-H insertion activity. Given the functional importance of histidine in many enzymes, these genetically encoded analogues could be valuable tools for probing mechanism and enabling new chemistries.

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Primary Citation of related structures