6Z1J image
Entry Detail
PDB ID:
6Z1J
Keywords:
Title:
Photosynthetic Reaction Center From Rhodobacter Sphaeroides strain RV LSP co-crystallization with spheroidene
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2020-05-13
Release Date:
2020-12-02
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 42 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Reaction center protein H chain
Chain IDs:A (auth: H)
Chain Length:241
Number of Molecules:1
Biological Source:Rhodobacter sphaeroides
Polymer Type:polypeptide(L)
Description:Reaction center protein L chain
Mutations:S178T
Chain IDs:B (auth: L)
Chain Length:281
Number of Molecules:1
Biological Source:Rhodobacter sphaeroides
Polymer Type:polypeptide(L)
Description:Reaction center protein M chain
Mutations:S8T
Chain IDs:C (auth: M)
Chain Length:302
Number of Molecules:1
Biological Source:Rhodobacter sphaeroides
Primary Citation
Novel approaches for the lipid sponge phase crystallization of the Rhodobacter sphaeroides photosynthetic reaction center.
Iucrj 7 1084 1091 (2020)
PMID: 33209319 DOI: 10.1107/S2052252520012142

Abstact

With the recent developments in the field of free-electron-laser-based serial femtosecond crystallography, the necessity to obtain a large number of high-quality crystals has emerged. In this work crystallization techniques were selected, tested and optimized for the lipid mesophase crystallization of the Rhodobacter sphaeroides membrane pigment-protein complex, known as the photosynthetic reaction center (RC). Novel approaches for lipid sponge phase crystallization in comparatively large volumes using Hamilton gas-tight glass syringes and plastic pipetting tips are described. An analysis of RC crystal structures obtained by lipid mesophase crystallization revealed non-native ligands that displaced the native electron-transfer cofactors (carotenoid sphero-idene and a ubi-quinone molecule) from their binding pockets. These ligands were identified and were found to be lipids that are major mesophase components. The selection of distinct co-crystallization conditions with the missing cofactors facilitated the restoration of sphero-idene in its binding site.

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