6Z1F image
Deposition Date 2020-05-13
Release Date 2020-09-23
Last Version Date 2025-04-09
Entry Detail
PDB ID:
6Z1F
Keywords:
Title:
CryoEM structure of Rubisco Activase with its substrate Rubisco from Nostoc sp. (strain PCC7120)
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.86 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Ribulose bisphosphate carboxylase/oxygenase activase
Gene (Uniprot):rca
Chain IDs:A (auth: 1), B (auth: 2), C (auth: 3), D (auth: 4), E (auth: 5), F (auth: 6)
Chain Length:290
Number of Molecules:6
Biological Source:Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
Polymer Type:polypeptide(L)
Molecule:Ribulose bisphosphate carboxylase large chain
Gene (Uniprot):cbbL
Chain IDs:G (auth: A), H (auth: B), I (auth: C), J (auth: D), K (auth: E), L (auth: F), M (auth: G), N (auth: H)
Chain Length:476
Number of Molecules:8
Biological Source:Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
Polymer Type:polypeptide(L)
Molecule:Ribulose bisphosphate carboxylase small chain
Gene (Uniprot):cbbS
Chain IDs:O (auth: I), P (auth: J), Q (auth: K), R (auth: L), S (auth: M), T (auth: N), U (auth: O), V (auth: P)
Chain Length:109
Number of Molecules:8
Biological Source:Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
KCX G LYS modified residue
Primary Citation
Dual Functions of a Rubisco Activase in Metabolic Repair and Recruitment to Carboxysomes.
Cell 183 457 473.e20 (2020)
PMID: 32979320 DOI: 10.1016/j.cell.2020.09.010

Abstact

Rubisco, the key enzyme of CO2 fixation in photosynthesis, is prone to inactivation by inhibitory sugar phosphates. Inhibited Rubisco undergoes conformational repair by the hexameric AAA+ chaperone Rubisco activase (Rca) in a process that is not well understood. Here, we performed a structural and mechanistic analysis of cyanobacterial Rca, a close homolog of plant Rca. In the Rca:Rubisco complex, Rca is positioned over the Rubisco catalytic site under repair and pulls the N-terminal tail of the large Rubisco subunit (RbcL) into the hexamer pore. Simultaneous displacement of the C terminus of the adjacent RbcL opens the catalytic site for inhibitor release. An alternative interaction of Rca with Rubisco is mediated by C-terminal domains that resemble the small Rubisco subunit. These domains, together with the N-terminal AAA+ hexamer, ensure that Rca is packaged with Rubisco into carboxysomes. The cyanobacterial Rca is a dual-purpose protein with functions in Rubisco repair and carboxysome organization.

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Primary Citation of related structures