6Z02 image
Deposition Date 2020-05-07
Release Date 2020-12-02
Last Version Date 2024-01-24
Entry Detail
PDB ID:
6Z02
Keywords:
Title:
Photosynthetic Reaction Center From Rhodobacter Sphaeroides strain RV in surfo crystallization
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.22
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 31 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Reaction center protein H chain
Gene (Uniprot):puhA
Chain IDs:A (auth: H)
Chain Length:241
Number of Molecules:1
Biological Source:Rhodobacter sphaeroides
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Reaction center protein L chain
Gene (Uniprot):pufL
Chain IDs:B (auth: L)
Chain Length:281
Number of Molecules:1
Biological Source:Rhodobacter sphaeroides
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Reaction center protein M chain
Gene (Uniprot):pufM
Chain IDs:C (auth: M)
Chain Length:302
Number of Molecules:1
Biological Source:Rhodobacter sphaeroides
Primary Citation
Novel approaches for the lipid sponge phase crystallization of the Rhodobacter sphaeroides photosynthetic reaction center.
Iucrj 7 1084 1091 (2020)
PMID: 33209319 DOI: 10.1107/S2052252520012142

Abstact

With the recent developments in the field of free-electron-laser-based serial femtosecond crystallography, the necessity to obtain a large number of high-quality crystals has emerged. In this work crystallization techniques were selected, tested and optimized for the lipid mesophase crystallization of the Rhodobacter sphaeroides membrane pigment-protein complex, known as the photosynthetic reaction center (RC). Novel approaches for lipid sponge phase crystallization in comparatively large volumes using Hamilton gas-tight glass syringes and plastic pipetting tips are described. An analysis of RC crystal structures obtained by lipid mesophase crystallization revealed non-native ligands that displaced the native electron-transfer cofactors (carotenoid sphero-idene and a ubi-quinone molecule) from their binding pockets. These ligands were identified and were found to be lipids that are major mesophase components. The selection of distinct co-crystallization conditions with the missing cofactors facilitated the restoration of sphero-idene in its binding site.

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Primary Citation of related structures