ISDA

Deposition Date 2020-05-04

Release Date 2020-09-30

Last Version Date 2024-01-24

Entry Detail

PDB ID:

6YY3

Keywords:

OXIDOREDUCTASE

Title:

XFEL structure of the Soluble methane monooxygenase hydroxylase and regulatory subunit complex, from Methylosinus trichosporium OB3b, t=0 diferrous state prior to oxygen activation

Biological Source:

Source Organism:

Methylosinus trichosporium OB3b (Taxon ID: 595536)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.00 Å

R-Value Free:

0.23

R-Value Work:

0.20

R-Value Observed:

0.20

Space Group:

P 41 21 2

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Methane monooxygenase
Chain IDs:A (auth: B)
Chain Length:395
Number of Molecules:1
Biological Source:Methylosinus trichosporium OB3b

UniProt ID:A0A2D2D5X7 Pfam ID:PF02332

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Methane monooxygenase component A alpha chain
Gene (Uniprot):mmoX
Chain IDs:B (auth: D)
Chain Length:526
Number of Molecules:1
Biological Source:Methylosinus trichosporium OB3b

UniProt ID:P27353 Pfam ID:PF02332 EC:1.14.13.25

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Methane monooxygenase
Chain IDs:C (auth: F)
Chain Length:169
Number of Molecules:1
Biological Source:Methylosinus trichosporium OB3b

UniProt ID:A0A2D2D0T0 Pfam ID:PF02964

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Methane monooxygenase regulatory protein B
Gene (Uniprot):mmoB
Chain IDs:D (auth: G)
Chain Length:138
Number of Molecules:1
Biological Source:Methylosinus trichosporium OB3b

UniProt ID:P27356 Pfam ID:PF02406 EC:1.14.13.25

Ligand Molecules

FE2

GOL

Primary Citation

High-Resolution XFEL Structure of the Soluble Methane Monooxygenase Hydroxylase Complex with its Regulatory Component at Ambient Temperature in Two Oxidation States.

Srinivas, V, Banerjee, R, Lebrette, H, Jones, J.C, Aurelius, O, Kim, I.S, Pham, C.C, Gul, S, Sutherlin, K.D, Bhowmick, A, John, J, Bozkurt, E, Fransson, T, Aller, P, Butryn, A, Bogacz, I, Simon, P, Keable, S, Britz, A, Tono, K, Kim, K.S, Park, S.Y, Lee, S.J, Park, J, Alonso-Mori, R, Fuller, F.D, Batyuk, A, Brewster, A.S, Bergmann, U, Sauter, N.K, Orville, A.M, Yachandra, V.K, Yano, J, Lipscomb, J.D, Kern, J, Hogbom, M.Show

J. Am. Chem. Soc. 142 14249 14266 (2020)

DOI: 10.1021/jacs.0c05613

Primary Citation of related structures