6YX5 image
Entry Detail
PDB ID:
6YX5
Keywords:
Title:
Structure of DrrA from Legionella pneumophilia in complex with human Rab8a
Biological Source:
PDB Version:
Deposition Date:
2020-04-30
Release Date:
2020-12-23
Method Details:
Experimental Method:
Resolution:
2.14 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 3 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Ras-related protein Rab-8A
Chain IDs:A
Chain Length:174
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Multifunctional virulence effector protein DrrA
Chain IDs:B
Chain Length:340
Number of Molecules:1
Biological Source:Legionella pneumophila
Primary Citation
Rab1-AMPylation by Legionella DrrA is allosterically activated by Rab1.
Nat Commun 12 460 460 (2021)
PMID: 33469029 DOI: 10.1038/s41467-020-20702-2

Abstact

Legionella pneumophila infects eukaryotic cells by forming a replicative organelle - the Legionella containing vacuole. During this process, the bacterial protein DrrA/SidM is secreted and manipulates the activity and post-translational modification (PTM) states of the vesicular trafficking regulator Rab1. As a result, Rab1 is modified with an adenosine monophosphate (AMP), and this process is referred to as AMPylation. Here, we use a chemical approach to stabilise low-affinity Rab:DrrA complexes in a site-specific manner to gain insight into the molecular basis of the interaction between the Rab protein and the AMPylation domain of DrrA. The crystal structure of the Rab:DrrA complex reveals a previously unknown non-conventional Rab-binding site (NC-RBS). Biochemical characterisation demonstrates allosteric stimulation of the AMPylation activity of DrrA via Rab binding to the NC-RBS. We speculate that allosteric control of DrrA could in principle prevent random and potentially cytotoxic AMPylation in the host, thereby perhaps ensuring efficient infection by Legionella.

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