ISDA

Deposition Date 2020-04-28

Release Date 2020-05-20

Last Version Date 2024-01-24

Entry Detail

PDB ID:

6YVT

Keywords:

OXIDOREDUCTASE

Title:

HIF prolyl hydroxylase 2 (PHD2/ EGLN1) in complex with MD-253

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli BL21(DE3)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.85 Å

R-Value Free:

0.26

R-Value Work:

0.23

R-Value Observed:

0.23

Space Group:

P 21 21 21

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Egl nine homolog 1
Gene (Uniprot):EGLN1
Chain IDs:A, B, C, D, E, F
Chain Length:252
Number of Molecules:6
Biological Source:Homo sapiens

UniProt ID:Q9GZT9 Pfam ID:PF13640 EC:1.14.11.2

Ligand Molecules

GOL

PW2

SO4

Primary Citation

Dynamic combinatorial chemistry employing boronic acids/boronate esters leads to potent oxygenase inhibitors.

Demetriades, M, Leung, I.K, Chowdhury, R, Chan, M.C, McDonough, M.A, Yeoh, K.K, Tian, Y.M, Claridge, T.D, Ratcliffe, P.J, Woon, E.C, Schofield, C.J.Show

Angew.Chem.Int.Ed.Engl. 51 6672 6675 (2012)

PMID: 22639232 DOI: 10.1002/anie.201202000

Primary Citation of related structures