ISDA

Deposition Date 2020-04-28

Release Date 2022-02-23

Last Version Date 2024-10-16

Entry Detail

PDB ID:

6YVO

Keywords:

LYASE

Title:

Human OMPD-domain of UMPS in complex with the substrate OMP at 1.25 Angstroms resolution, 3.55 MGy exposure

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.25 Å

R-Value Free:

0.16

R-Value Work:

0.13

R-Value Observed:

0.13

Space Group:

C 2 2 21

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Uridine 5'-monophosphate synthase
Gene (Uniprot):UMPS
Chain IDs:A
Chain Length:260
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P11172 Pfam ID:PF00215 EC:4.1.1.23

Modified Residue

Compound ID	Chain ID	Parent Comp ID	Details	2D Image
ALY	A	LYS	modified residue
CSS	A	CYS	modified residue

Ligand Molecules

GOL

OMP

SO4

Primary Citation

Ground-state destabilization by electrostatic repulsion is not a driving force in orotidine-5-monophosphate decarboxylase catalysis

Rindfleisch, S, Krull, M, Uranga, J, Schmidt, T, Rabe von Pappenheim, F, Kirck, L.L, Balouri, A, Schneider, T, Chari, A, Kluger, R, Bourenkov, G, Diederichsen, U, Mata, R.A, Tittmann, K.Show

Nat Catal 5 332 341 (2022)

DOI: 10.1038/s41929-022-00771-w

Primary Citation of related structures