6YU8 image
Entry Detail
PDB ID:
6YU8
Keywords:
Title:
RNA Methyltransferase of Sudan Ebola Virus
Biological Source:
PDB Version:
Deposition Date:
2020-04-25
Release Date:
2021-02-17
Method Details:
Experimental Method:
Resolution:
1.84 Å
R-Value Free:
0.21
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 62 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Methyltransferase domain of the L protein
Chain IDs:A
Chain Length:310
Number of Molecules:1
Biological Source:Sudan virus - Boniface, Sudan,1976
Polymer Type:polypeptide(L)
Description:VHH antiboby
Chain IDs:B
Chain Length:128
Number of Molecules:1
Biological Source:Lama glama
Primary Citation
First insights into the structural features of Ebola virus methyltransferase activities.
Nucleic Acids Res. 49 1737 1748 (2021)
PMID: 33503246 DOI: 10.1093/nar/gkaa1276

Abstact

The Ebola virus is a deadly human pathogen responsible for several outbreaks in Africa. Its genome encodes the 'large' L protein, an essential enzyme that has polymerase, capping and methyltransferase activities. The methyltransferase activity leads to RNA co-transcriptional modifications at the N7 position of the cap structure and at the 2'-O position of the first transcribed nucleotide. Unlike other Mononegavirales viruses, the Ebola virus methyltransferase also catalyses 2'-O-methylation of adenosines located within the RNA sequences. Herein, we report the crystal structure at 1.8 Å resolution of the Ebola virus methyltransferase domain bound to a fragment of a camelid single-chain antibody. We identified structural determinants and key amino acids specifically involved in the internal adenosine-2'-O-methylation from cap-related methylations. These results provide the first high resolution structure of an ebolavirus L protein domain, and the framework to investigate the effects of epitranscriptomic modifications and to design possible antiviral drugs against the Filoviridae family.

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Primary Citation of related structures